Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 8.9e-261 903.3 486 100.0
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.5e-183 646.0 525 74.1
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-180 637.1 514 74.1
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-173 613.2 526 71.5
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-170 603.6 512 70.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.5e-154 550.4 562 63.7
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-145 520.8 561 61.5
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.7e-145 518.8 566 61.0
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 6.4e-142 508.4 571 60.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 3.3e-138 496.1 566 59.4
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 9.8e-135 484.6 573 57.9
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 3.2e-125 453.0 577 54.8
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.2e-119 434.5 475 59.4
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.5e-119 434.1 573 53.1
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-116 424.1 487 57.9
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 5.1e-115 419.1 487 58.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.3e-114 416.4 491 58.7
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.6e-113 414.1 565 51.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 7.1e-109 398.7 563 52.6
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 4.6e-108 396.0 500 54.0
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-107 394.8 503 54.1
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.8e-104 384.0 429 58.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 9.0e-96 355.1 224 87.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 7.9e-84 315.5 499 46.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.7e-81 306.6 251 69.7
BcaNung02354 Brassica carinata HOM05D003739 ORTHO05D003996 6.3e-73 279.3 283 64.3
Sp5g17020 Schrenkiella parvula HOM05D003739 ORTHO05D003996 2.0e-66 257.7 328 55.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 4.8e-57 226.5 555 36.8
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 8.5e-46 189.1 247 51.4
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.1e-40 172.2 378 37.6
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.8e-40 171.4 258 43.8
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.0e-38 165.6 263 42.6
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.5e-37 161.8 184 48.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.5e-37 161.8 261 40.6
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 2.5e-37 161.0 270 42.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 2.5e-37 161.0 266 41.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 5.5e-37 159.8 305 38.4
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.1e-36 157.9 352 37.2
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.6e-36 157.1 311 39.5
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.0e-35 155.6 266 41.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.4e-35 155.2 309 36.2
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.0e-35 154.1 258 40.7
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.0e-35 153.7 261 41.8
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.2e-35 153.3 188 47.9
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.4e-34 150.6 352 35.5
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 9.8e-34 149.1 320 35.6
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.7e-33 148.3 268 38.8
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.7e-33 148.3 255 37.6
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 2.2e-33 147.9 258 39.9
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 4.9e-33 146.7 312 36.9
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.9e-33 146.7 303 37.0
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.1e-32 145.6 236 41.5
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.4e-32 145.2 307 36.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.8e-32 144.8 311 37.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.1e-32 144.1 317 35.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 4.1e-32 143.7 337 35.3
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.6e-31 141.7 254 39.4
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.0e-31 141.4 332 35.5
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.5e-31 140.6 415 28.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.5e-31 140.2 251 39.0
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 5.9e-31 139.8 317 34.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 7.8e-31 139.4 164 48.2
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.0e-30 139.0 379 33.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.3e-30 138.7 312 37.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.7e-30 138.3 326 33.7
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.3e-30 137.9 267 38.6
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 3.8e-30 137.1 405 32.8
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.5e-29 134.4 293 36.2
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 2.5e-29 134.4 324 35.5
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.2e-28 132.1 319 37.0
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.6e-28 131.7 226 38.9
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.1e-28 131.3 139 50.4
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.8e-28 131.0 314 35.4
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.6e-28 130.6 339 31.6
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.7e-28 130.2 335 31.9
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 4.7e-28 130.2 440 31.1
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.0e-27 129.0 308 35.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.4e-27 128.6 352 33.5
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.8e-27 128.3 424 27.6
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 4.0e-27 127.1 320 34.7
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.0e-27 127.1 329 32.8
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 5.2e-27 126.7 291 35.4
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.0e-26 124.8 305 35.4
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.0e-26 124.8 271 36.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 3.4e-26 124.0 262 34.4
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 4.4e-26 123.6 334 33.8
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.7e-26 123.2 331 33.5
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 7.5e-26 122.9 289 33.2
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.8e-26 122.5 338 34.3
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.3e-25 122.1 346 33.5
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 3.7e-25 120.6 262 32.8
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.4e-25 119.8 277 35.0
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 8.3e-25 119.4 343 34.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.1e-24 119.0 254 36.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.8e-24 118.2 251 33.1
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.1e-24 117.1 349 31.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.4e-24 116.7 334 33.8
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 5.4e-24 116.7 207 36.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 9.2e-24 115.9 402 27.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.2e-23 115.5 258 32.6
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.2e-23 115.5 287 34.1
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.0e-23 114.8 344 33.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 3.5e-23 114.0 163 43.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.0e-22 112.5 352 35.8
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.7e-22 111.7 319 30.7
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.7e-22 111.7 252 32.9
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 6.6e-22 109.8 249 36.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 8.6e-22 109.4 465 29.9
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.1e-21 109.0 62 82.3
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.5e-21 108.6 399 26.3
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.9e-21 108.2 350 30.6
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 4.3e-21 107.1 279 33.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 4.3e-21 107.1 344 29.9
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.6e-21 106.7 260 33.5
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.6e-21 106.7 102 49.0
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 3.1e-19 100.9 345 32.2
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.8e-19 99.8 257 31.9
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.6e-18 97.8 265 30.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.7e-17 95.1 355 31.0
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-17 95.1 209 33.5
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 4.9e-17 93.6 332 31.6
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 8.3e-17 92.8 220 32.7
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.4e-16 92.0 323 28.5
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-15 88.6 163 36.2
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.7e-15 87.8 374 25.9
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.7e-15 87.8 150 37.3
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 6.0e-15 86.7 304 30.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 6.0e-15 86.7 216 33.8
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.3e-14 85.5 202 29.7
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.7e-14 85.1 281 29.5
CARHR106830 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.9e-14 84.0 106 48.1
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.9e-13 81.6 219 32.9
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 5.6e-13 80.1 121 33.1
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 9.5e-13 79.3 121 33.9
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.1e-12 78.2 149 35.6
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.1e-12 78.2 149 35.6
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.8e-12 77.8 136 35.3
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 3.6e-12 77.4 99 38.4
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.6e-12 77.4 325 30.2
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.2e-11 73.6 184 32.1
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 3.4e-10 70.9 120 35.8
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 3.4e-10 70.9 54 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-09 68.6 287 27.5
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 3.7e-09 67.4 102 32.4
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 8.3e-09 66.2 71 54.9
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-07 62.0 151 35.1
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.3e-06 58.2 55 49.1


User provided reference genes

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