Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.0e-44 182.2 100 100.0
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 6.8e-37 157.1 100 91.0
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 5.8e-36 154.1 100 90.0
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.3e-35 152.9 94 94.7
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.3e-35 152.9 100 89.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.7e-35 152.5 100 88.0
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 6.4e-35 150.6 100 90.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 4.2e-34 147.9 100 85.0
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.6e-33 146.0 94 90.4
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.6e-33 146.0 94 90.4
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 6.0e-33 144.1 98 84.7
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 7.8e-33 143.7 94 88.3
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 2.3e-32 142.1 92 89.1
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 6.6e-32 140.6 92 91.3
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.1e-29 133.3 98 79.6
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 2.2e-27 125.6 98 73.5
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 6.4e-27 124.0 81 90.1
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.4e-26 122.1 100 71.0
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.2e-25 119.8 100 65.0
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 7.8e-25 117.1 100 72.0
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.0e-24 116.7 100 65.0
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 7.3e-23 110.5 98 63.3
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.8e-22 108.6 98 57.1
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.1e-21 106.7 100 59.0
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 3.1e-21 105.1 94 61.7
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.3e-21 104.4 100 59.0
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 9.0e-21 103.6 101 61.4
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 9.0e-21 103.6 99 62.6
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.5e-20 102.8 99 62.6
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 3.4e-20 101.7 94 60.6
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.4e-20 101.7 101 62.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.4e-20 101.7 101 62.4
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 5.8e-20 100.9 100 57.0
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 5.8e-20 100.9 98 56.1
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 9.9e-20 100.1 102 57.8
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 9.9e-20 100.1 94 58.5
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-19 99.8 95 64.2
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-19 99.8 95 64.2
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.2e-19 99.0 98 56.1
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.8e-19 98.2 100 57.0
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.8e-19 98.2 100 57.0
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.9e-19 97.8 99 56.6
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 8.4e-19 97.1 94 58.5
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.1e-18 96.7 99 60.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.1e-18 96.7 101 59.4
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.4e-18 96.3 100 57.0
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.2e-17 93.2 98 53.1
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 2.1e-17 92.4 98 57.1
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 6.0e-17 90.9 96 59.4
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 7.9e-17 90.5 100 54.0
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.0e-16 90.1 98 60.2
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.0e-16 90.1 101 51.5
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.8e-16 89.4 99 54.5
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.8e-16 89.4 98 54.1
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.9e-16 88.2 95 57.9
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 6.7e-16 87.4 103 53.4
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 6.7e-16 87.4 99 53.5
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 6.7e-16 87.4 101 52.5
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 8.7e-16 87.0 105 50.5
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 3.3e-15 85.1 99 53.5
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.3e-15 84.7 95 53.7
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 9.6e-15 83.6 100 49.0
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 9.6e-15 83.6 100 49.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 9.6e-15 83.6 100 49.0
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 9.6e-15 83.6 98 50.0
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 1.3e-14 83.2 91 53.8
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 1.3e-14 83.2 91 53.8
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.3e-14 83.2 95 54.7
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 1.6e-14 82.8 99 50.5
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 2.8e-14 82.0 94 52.1
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 4.8e-14 81.3 95 50.5
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 4.8e-14 81.3 99 49.5
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 6.2e-14 80.9 97 48.5
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 6.2e-14 80.9 98 46.9
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 8.1e-14 80.5 105 46.7
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 8.1e-14 80.5 99 48.5
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 1.1e-13 80.1 97 48.5
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.4e-13 79.7 85 50.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.8e-13 79.3 92 51.1
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.4e-13 79.0 93 50.5
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 3.1e-13 78.6 101 47.5
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.1e-13 78.6 100 50.0
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 6.9e-13 77.4 101 52.5
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 6.9e-13 77.4 96 53.1
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 9.0e-13 77.0 94 51.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.5e-12 76.3 99 47.5
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 2.6e-12 75.5 95 48.4
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 3.4e-12 75.1 97 45.4
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.4e-12 75.1 94 48.9
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 5.8e-12 74.3 85 50.6
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 5.8e-12 74.3 88 52.3
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 7.6e-12 73.9 95 50.5
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.2e-11 72.4 100 46.0
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 2.9e-11 72.0 103 50.5
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 3.8e-11 71.6 88 50.0
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 6.5e-11 70.9 98 50.0
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 8.4e-11 70.5 96 50.0
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 3.2e-10 68.6 98 45.9
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 4.2e-10 68.2 99 44.4
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 4.2e-10 68.2 95 45.3
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 4.2e-10 68.2 91 49.5
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 2.7e-09 65.5 95 44.2
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 2.3e-08 62.4 94 41.5
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 3.0e-08 62.0 53 58.5
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 5.1e-08 61.2 46 65.2
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 6.7e-08 60.8 78 51.3
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.9e-07 59.3 89 48.3
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 2.5e-07 58.9 95 44.2
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 2.5e-07 58.9 67 50.7
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 4.3e-07 58.2 65 47.7
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 4.3e-07 58.2 100 40.0
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.3e-07 58.2 87 48.3
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 9.6e-07 57.0 94 43.6
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 1.3e-06 56.6 54 57.4
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.6e-06 56.2 97 38.1
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 2.1e-06 55.8 101 43.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.7e-06 55.1 64 50.0
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 4.8e-06 54.7 99 40.4
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 6.2e-06 54.3 69 40.6
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 6.2e-06 54.3 58 48.3
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 6.2e-06 54.3 94 41.5


User provided reference genes

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