Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-229 798.5 408 100.0
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-214 748.0 402 94.5
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 3.7e-214 748.0 402 94.5
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 4.8e-214 747.7 402 95.0
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.5e-212 741.1 402 94.5
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.9e-212 740.7 402 94.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-211 739.2 402 93.5
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.2e-210 734.6 402 92.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-208 729.6 402 92.0
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 5.2e-208 727.6 402 91.0
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 5.2e-208 727.6 402 91.0
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 5.2e-208 727.6 402 91.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.2e-206 722.2 402 90.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.8e-206 721.8 402 90.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 4.8e-206 721.1 402 90.0
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.4e-205 719.5 401 91.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.8e-205 719.2 401 91.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.1e-205 718.0 402 90.3
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-203 713.4 414 89.1
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.1e-201 705.7 402 88.3
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 6.8e-200 700.7 405 87.9
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 6.8e-200 700.7 402 87.8
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-199 699.5 402 88.6
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 4.5e-196 688.0 402 87.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 5.6e-194 681.0 384 89.6
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.5e-191 672.9 402 83.1
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-182 642.9 368 88.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 4.9e-174 614.8 401 76.3
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 4.9e-174 614.8 401 75.1
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.7e-172 609.0 401 74.1
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 3.5e-172 608.6 401 74.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.5e-172 608.6 402 73.4
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.0e-172 607.8 401 73.8
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.0e-172 607.8 401 74.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 8.6e-171 604.0 401 74.1
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.9e-170 602.8 401 72.3
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 9.5e-170 600.5 401 73.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.6e-169 598.6 401 73.3
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 8.1e-169 597.4 401 73.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 8.1e-169 597.4 401 73.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-168 597.0 401 72.1
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.9e-168 594.0 401 72.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-167 593.6 401 73.1
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.5e-167 593.2 402 73.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.5e-167 593.2 401 72.3
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.6e-167 592.4 401 72.8
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.4e-167 591.7 402 73.1
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 5.8e-167 591.3 402 73.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 7.6e-167 590.9 401 72.1
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.2e-166 589.3 401 71.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.9e-166 588.2 403 72.7
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 6.4e-166 587.8 401 72.8
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 6.4e-166 587.8 401 71.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 8.4e-166 587.4 401 70.3
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 8.4e-166 587.4 402 71.1
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.4e-165 585.9 401 72.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 7.1e-165 584.3 402 70.4
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 9.2e-165 583.9 401 72.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-164 583.6 401 71.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.8e-164 580.9 401 72.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.0e-163 580.5 402 69.9
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.7e-163 579.7 401 70.8
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.3e-163 579.3 402 69.9
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 5.1e-163 578.2 401 71.6
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.9e-162 576.2 402 70.4
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.5e-162 575.9 403 70.5
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 9.6e-162 573.9 401 69.8
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 3.6e-161 572.0 402 70.6
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.2e-161 571.2 402 69.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.2e-161 571.2 402 69.2
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.1e-160 570.5 401 69.3
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.0e-160 568.5 400 69.5
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 9.0e-160 567.4 402 69.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-159 567.0 402 68.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.6e-159 565.8 402 69.7
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 9.9e-159 563.9 400 69.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.9e-159 563.9 402 69.2
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-158 561.2 402 69.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-158 561.2 402 69.7
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 8.4e-158 560.8 402 69.2
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-157 560.5 401 67.8
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 2.4e-157 559.3 401 68.6
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-156 556.6 402 68.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.6e-156 556.6 401 68.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.6e-156 556.6 401 68.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.5e-156 555.4 401 66.3
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.1e-155 551.6 383 71.0
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 8.7e-155 550.8 402 68.4
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.3e-153 547.0 402 68.9
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-153 546.6 401 66.1
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.8e-153 545.0 401 68.8
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.2e-153 544.7 401 69.8
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.1e-152 542.3 403 68.5
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.5e-151 540.0 401 66.6
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.5e-151 540.0 391 67.8
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.6e-151 539.3 402 66.4
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 4.5e-151 538.5 402 67.4
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 9.9e-151 537.3 402 65.9
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.2e-150 536.2 404 66.1
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-149 533.9 401 65.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.2e-148 530.4 402 64.7
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.7e-148 529.3 403 64.8
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 6.0e-148 528.1 402 66.7
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 3.9e-147 525.4 403 65.8
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 7.4e-146 521.2 403 64.8
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.2e-145 518.1 339 74.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.7e-142 510.0 355 70.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 7.9e-140 501.1 402 61.7
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.4e-136 490.3 360 67.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.4e-135 485.7 401 61.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 4.5e-135 485.3 401 63.3
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 5.8e-135 485.0 401 63.1
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 6.0e-132 474.9 401 61.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.8e-131 473.4 409 58.4
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.5e-130 470.3 365 60.5
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.5e-130 469.5 400 62.2
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 5.7e-130 468.4 401 60.1
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.1e-128 462.6 403 60.8
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.9e-126 456.1 302 72.5
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.1e-125 454.1 304 78.6
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.4e-125 453.8 405 60.2
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.3e-121 438.3 402 57.0
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.4e-120 437.2 389 59.9
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.0e-118 431.0 399 51.9
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 5.0e-110 402.1 402 56.0
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.8e-105 386.3 400 54.0
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.4e-96 357.5 333 51.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.6e-82 310.1 391 47.8
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.1e-80 302.8 199 72.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.6e-74 283.5 211 62.6
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 8.3e-73 278.5 218 63.3
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.6e-71 274.2 359 46.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.3e-70 271.2 402 43.0
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.9e-61 240.7 161 75.2
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-58 231.1 156 71.2
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-57 226.9 158 71.5
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 4.0e-51 206.5 191 55.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 9.9e-34 148.7 440 27.5
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 5.6e-29 132.9 121 63.6
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-26 124.0 92 64.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.4e-26 123.6 93 63.4
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.9e-25 119.8 84 70.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.7e-23 114.0 162 42.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.3e-20 105.1 181 31.5
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-19 101.7 152 46.1
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.1e-16 92.0 79 59.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.5e-16 90.9 91 50.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-15 87.0 71 59.2
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 4.6e-15 86.7 70 60.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 7.9e-15 85.9 71 57.7
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 3.0e-14 84.0 57 75.4
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 3.9e-14 83.6 51 78.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.3e-13 80.5 88 51.1
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.4e-11 75.1 74 52.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 6.7e-06 56.2 45 60.0


User provided reference genes

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