Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 7.0e-119 431.0 287 100.0
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.6e-86 323.6 234 92.3
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.6e-86 323.6 234 92.3
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.6e-86 323.6 234 92.3
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-82 310.5 234 91.5
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 5.3e-82 308.5 240 90.8
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-74 283.1 232 84.9
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 2.6e-73 279.6 232 84.9
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 8.4e-72 274.6 233 82.8
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 8.4e-72 274.6 236 83.9
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.3e-69 266.5 233 77.7
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.1e-69 265.4 240 80.8
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 5.7e-68 261.9 233 79.0
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 5.7e-68 261.9 233 81.1
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.1e-66 257.7 232 77.6
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 3.1e-66 256.1 233 76.4
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 4.2e-63 245.7 171 87.1
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 4.6e-62 242.3 234 72.6
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 3.7e-51 206.1 243 63.0
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.4e-42 176.8 144 68.1
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 5.3e-42 175.6 174 69.0
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 2.9e-40 169.9 199 53.3
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 6.5e-40 168.7 144 63.2
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 2.5e-39 166.8 129 71.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 9.4e-39 164.9 238 54.2
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 1.4e-37 161.0 188 52.7
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 1.4e-37 161.0 150 62.7
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 1.4e-37 161.0 137 62.8
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 3.0e-37 159.8 122 69.7
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 4.0e-37 159.5 136 68.4
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 5.2e-37 159.1 146 59.6
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 6.8e-37 158.7 139 62.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 8.8e-37 158.3 138 65.9
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.2e-36 157.9 138 63.0
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.2e-36 157.9 239 46.9
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.5e-36 157.5 195 51.3
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 2.0e-36 157.1 151 60.3
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 2.0e-36 157.1 188 52.1
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 3.4e-36 156.4 145 62.8
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 4.4e-36 156.0 141 61.7
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 5.7e-36 155.6 136 61.8
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 5.7e-36 155.6 136 61.8
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 7.5e-36 155.2 144 62.5
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 9.7e-36 154.8 136 61.8
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 1.3e-35 154.5 134 61.2
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 2.8e-35 153.3 129 65.9
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 3.7e-35 152.9 237 47.3
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 4.8e-35 152.5 129 62.8
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 6.3e-35 152.1 143 61.5
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 6.3e-35 152.1 145 60.0
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 6.3e-35 152.1 144 61.1
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 8.3e-35 151.8 132 62.9
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.1e-34 151.4 131 61.8
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.4e-34 151.0 239 45.6
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.8e-34 150.6 140 61.4
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 2.4e-34 150.2 126 64.3
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 3.1e-34 149.8 131 62.6
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.1e-34 149.8 145 57.2
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 4.1e-34 149.4 150 63.3
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 4.1e-34 149.4 197 54.3
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 4.1e-34 149.4 150 63.3
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 4.1e-34 149.4 236 45.8
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 5.3e-34 149.1 202 54.0
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 5.3e-34 149.1 189 53.4
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 9.1e-34 148.3 193 50.3
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 9.1e-34 148.3 143 59.4
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 9.1e-34 148.3 188 48.9
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 9.1e-34 148.3 138 58.7
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 2.0e-33 147.1 190 49.5
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 2.0e-33 147.1 197 53.8
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 2.7e-33 146.7 138 60.1
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 3.5e-33 146.4 139 56.8
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 4.5e-33 146.0 203 53.2
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 4.5e-33 146.0 145 57.9
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 7.7e-33 145.2 256 51.6
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 7.7e-33 145.2 256 51.6
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 7.7e-33 145.2 256 51.6
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 7.7e-33 145.2 143 55.2
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.0e-32 144.8 136 60.3
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.3e-32 144.4 238 43.3
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.9e-32 143.3 144 56.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 2.9e-32 143.3 144 56.2
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 5.0e-32 142.5 248 54.0
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 5.0e-32 142.5 248 54.0
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 5.0e-32 142.5 147 53.7
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 6.5e-32 142.1 128 61.7
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 6.5e-32 142.1 126 63.5
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 8.5e-32 141.7 184 48.9
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.5e-31 141.0 131 58.8
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 2.5e-31 140.2 265 41.1
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 3.2e-31 139.8 148 56.8
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.2e-31 139.8 148 56.8
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 5.5e-31 139.0 149 60.4
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 5.5e-31 139.0 171 50.9
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 5.5e-31 139.0 190 46.8
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 9.4e-31 138.3 131 58.8
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 9.4e-31 138.3 148 56.1
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.6e-30 137.5 148 56.1
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 2.1e-30 137.1 135 57.0
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 2.1e-30 137.1 126 57.9
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 2.7e-30 136.7 136 59.6
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 2.7e-30 136.7 179 51.4
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.6e-30 136.3 145 55.2
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 3.6e-30 136.3 145 56.6
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 4.7e-30 136.0 126 60.3
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 6.1e-30 135.6 126 57.9
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.0e-29 133.3 134 55.2
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.0e-29 133.3 131 58.0
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 3.0e-29 133.3 127 59.8
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 4.0e-29 132.9 126 56.3
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 5.2e-29 132.5 126 57.1
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.2e-29 132.5 150 58.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 6.8e-29 132.1 131 57.3
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.5e-28 131.0 122 59.8
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.5e-28 131.0 130 59.2
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 4.4e-28 129.4 195 50.8
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 9.8e-28 128.3 141 53.9
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.3e-27 125.6 148 54.1
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-26 124.4 203 50.2
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 7.0e-26 122.1 204 50.0
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.2e-25 121.3 161 49.7
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 3.5e-25 119.8 233 53.2
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.9e-25 119.0 103 62.1
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 1.3e-24 117.9 126 52.4
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.7e-24 117.5 140 51.4
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-22 111.3 131 50.4
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.6e-22 110.9 193 47.7
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 5.2e-21 105.9 147 48.3
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.0e-20 104.0 111 53.2
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 4.4e-20 102.8 160 43.1
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 4.4e-20 102.8 130 50.8
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 9.8e-20 101.7 144 46.5
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 8.3e-19 98.6 191 45.0
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 2.3e-16 90.5 108 50.0
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.4e-12 76.6 94 48.9
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 2.2e-11 73.9 190 38.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.1e-10 71.6 63 65.1
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 3.0e-08 63.5 69 58.0


User provided reference genes

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