Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 3.3e-66 255.0 136 100.0
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 1.6e-36 156.4 100 84.0
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 3.5e-36 155.2 92 91.3
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 3.5e-36 155.2 92 91.3
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 7.9e-36 154.1 94 89.4
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 1.3e-35 153.3 101 84.2
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 3.0e-35 152.1 96 85.4
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 1.1e-34 150.2 100 80.0
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.1e-34 150.2 100 81.0
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 1.5e-34 149.8 100 81.0
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.9e-34 149.4 100 80.0
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 3.3e-34 148.7 100 79.0
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 3.3e-34 148.7 88 89.8
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 5.6e-34 147.9 88 89.8
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 5.6e-34 147.9 100 78.0
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 1.4e-32 143.3 94 79.8
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.3e-30 136.7 92 77.2
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 2.9e-30 135.6 77 92.2
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 2.9e-30 135.6 77 92.2
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 4.3e-26 121.7 97 64.9
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 1.6e-25 119.8 97 64.9
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 2.4e-24 115.9 97 61.9
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 6.9e-24 114.4 97 59.8
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 2.0e-23 112.8 98 58.2
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 2.0e-23 112.8 98 58.2
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 2.6e-23 112.5 97 58.8
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 7.6e-23 110.9 98 58.2
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 7.6e-23 110.9 97 57.7
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.7e-22 109.8 97 62.9
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 2.2e-22 109.4 97 58.8
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 3.8e-22 108.6 96 59.4
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.4e-21 106.7 86 62.8
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 3.2e-21 105.5 97 53.6
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 4.2e-21 105.1 97 56.7
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 5.5e-21 104.8 98 51.0
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 7.2e-21 104.4 95 55.8
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 7.2e-21 104.4 95 58.9
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 9.4e-21 104.0 98 53.1
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 3.6e-20 102.1 99 53.5
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 3.6e-20 102.1 95 54.7
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 4.6e-20 101.7 99 54.5
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 4.6e-20 101.7 99 52.5
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.4e-19 100.1 97 52.6
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 1.8e-19 99.8 97 53.6
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 1.8e-19 99.8 98 52.0
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 2.3e-19 99.4 98 51.0
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 2.3e-19 99.4 122 45.9
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 3.0e-19 99.0 97 51.5
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 3.0e-19 99.0 98 51.0
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 3.9e-19 98.6 84 63.1
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 3.9e-19 98.6 95 54.7
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 3.9e-19 98.6 97 50.5
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 5.1e-19 98.2 97 52.6
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 5.1e-19 98.2 97 53.6
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.7e-19 97.8 98 51.0
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 6.7e-19 97.8 90 52.2
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 6.7e-19 97.8 108 50.0
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 8.8e-19 97.4 97 50.5
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 1.1e-18 97.1 97 54.6
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 1.5e-18 96.7 94 51.1
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 1.9e-18 96.3 98 50.0
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 3.3e-18 95.5 95 51.6
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 3.3e-18 95.5 96 53.1
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 3.3e-18 95.5 97 51.5
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 3.3e-18 95.5 122 45.1
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 3.3e-18 95.5 99 50.5
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 4.3e-18 95.1 85 54.1
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 5.7e-18 94.7 54 92.6
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 7.4e-18 94.4 98 51.0
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 9.7e-18 94.0 98 50.0
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 9.7e-18 94.0 98 49.0
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 9.7e-18 94.0 78 64.1
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 1.3e-17 93.6 97 48.5
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.3e-17 93.6 97 48.5
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.3e-17 93.6 97 48.5
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.7e-17 93.2 97 48.5
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.7e-17 93.2 98 49.0
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 2.2e-17 92.8 98 48.0
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 2.8e-17 92.4 97 48.5
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 2.8e-17 92.4 98 46.9
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 3.7e-17 92.0 99 50.5
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.3e-17 91.3 97 47.4
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 1.1e-16 90.5 95 49.5
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.1e-16 90.5 94 48.9
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 2.4e-16 89.4 125 42.4
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 3.1e-16 89.0 99 46.5
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 4.1e-16 88.6 81 58.0
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 5.3e-16 88.2 88 43.2
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.5e-15 86.7 63 66.7
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 2.6e-15 85.9 99 44.4
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 3.4e-15 85.5 98 44.9
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 4.5e-15 85.1 98 45.9
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 4.5e-15 85.1 96 43.8
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 1.0e-14 84.0 98 45.9
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 1.0e-14 84.0 98 43.9
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 2.2e-14 82.8 53 83.0
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 2.2e-14 82.8 61 63.9
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 8.5e-14 80.9 99 37.4
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 8.5e-14 80.9 81 50.6
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 1.1e-13 80.5 89 47.2
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 1.4e-13 80.1 99 40.4
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 1.9e-13 79.7 99 40.4
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 3.2e-13 79.0 100 44.0
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 3.2e-13 79.0 97 42.3
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 4.2e-13 78.6 85 44.7
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 4.2e-13 78.6 89 46.1
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 7.2e-13 77.8 102 43.1
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 1.2e-12 77.0 85 51.8
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 6.1e-12 74.7 97 45.4
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 2.3e-11 72.8 91 41.8
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 6.7e-11 71.2 74 45.9
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.1e-10 70.5 49 61.2
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.1e-10 70.5 49 61.2
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 7.0e-08 61.2 99 34.3
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 2.0e-07 59.7 81 43.2
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 3.4e-07 58.9 79 39.2


User provided reference genes

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