Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 7.9e-103 377.1 188 100.0
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.8e-91 339.3 186 90.9
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 5.3e-91 337.8 186 90.3
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 1.4e-83 313.2 186 84.9
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 1.4e-83 313.2 186 84.9
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 1.8e-83 312.8 190 83.2
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 4.5e-82 308.1 191 83.8
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 5.0e-81 304.7 185 82.7
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 5.0e-81 304.7 185 82.7
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 4.0e-78 295.0 185 77.8
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 4.4e-77 291.6 186 77.4
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 3.7e-76 288.5 186 78.0
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 5.2e-70 268.1 184 77.2
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 8.8e-70 267.3 186 71.5
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 5.0e-57 224.9 176 63.6
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 6.6e-57 224.6 134 80.6
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 1.9e-56 223.0 203 63.5
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 1.9e-56 223.0 203 63.5
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 5.8e-45 184.9 176 52.3
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 1.7e-44 183.3 177 52.5
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 1.7e-44 183.3 175 50.3
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 2.2e-44 183.0 185 53.0
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 2.9e-44 182.6 182 51.6
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 8.3e-44 181.0 168 56.5
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 8.3e-44 181.0 177 53.1
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 8.3e-44 181.0 172 52.3
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 3.2e-43 179.1 181 50.8
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 4.1e-43 178.7 172 51.7
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 9.2e-43 177.6 168 53.0
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 1.2e-42 177.2 183 51.9
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.6e-42 176.8 182 50.5
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 2.7e-42 176.0 177 49.7
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 2.3e-41 172.9 181 50.8
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.0e-41 172.6 177 52.5
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 5.0e-41 171.8 172 50.6
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 5.0e-41 171.8 172 50.6
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 8.6e-41 171.0 176 51.1
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 8.6e-41 171.0 171 54.4
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.9e-40 169.9 176 51.7
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 2.5e-40 169.5 174 51.7
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 3.3e-40 169.1 177 50.8
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 5.6e-40 168.3 176 47.7
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 7.3e-40 167.9 176 47.7
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 7.3e-40 167.9 177 50.3
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 7.3e-40 167.9 182 49.5
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 9.5e-40 167.5 168 50.6
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.2e-39 167.2 178 49.4
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 1.6e-39 166.8 182 50.0
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 6.2e-39 164.9 171 50.9
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 6.2e-39 164.9 184 47.3
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 6.2e-39 164.9 172 48.8
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 8.1e-39 164.5 174 50.6
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 2.3e-38 162.9 168 49.4
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 3.1e-38 162.5 177 48.0
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 4.0e-38 162.2 184 49.5
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 4.0e-38 162.2 178 46.1
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 6.8e-38 161.4 178 47.2
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 6.8e-38 161.4 166 51.2
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 6.8e-38 161.4 177 46.9
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 1.2e-37 160.6 176 45.5
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 1.2e-37 160.6 181 46.4
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.5e-37 160.2 168 50.0
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 2.0e-37 159.8 186 45.7
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 2.0e-37 159.8 186 45.7
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 2.6e-37 159.5 175 46.3
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 3.4e-37 159.1 178 46.6
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 3.4e-37 159.1 194 45.4
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 4.4e-37 158.7 174 47.1
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 7.5e-37 157.9 183 43.7
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 1.3e-36 157.1 177 46.3
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 2.9e-36 156.0 175 49.7
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 3.7e-36 155.6 182 46.7
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 3.7e-36 155.6 182 45.1
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 8.3e-36 154.5 212 42.5
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 8.3e-36 154.5 178 45.5
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 8.3e-36 154.5 194 44.3
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 1.4e-35 153.7 169 46.2
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 7.1e-35 151.4 191 45.0
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 7.1e-35 151.4 185 44.3
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 9.2e-35 151.0 167 47.3
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 9.2e-35 151.0 178 45.5
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 4.6e-34 148.7 176 44.3
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 3.0e-33 146.0 166 50.0
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 5.1e-33 145.2 166 50.0
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 8.6e-33 144.4 166 49.4
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.5e-32 143.7 182 46.2
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 3.3e-32 142.5 169 43.2
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 7.3e-32 141.4 167 46.7
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 3.6e-31 139.0 174 45.4
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 6.2e-31 138.3 90 67.8
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 8.1e-31 137.9 187 43.9
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.4e-30 137.1 108 58.3
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 4.0e-30 135.6 192 40.6
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 8.9e-30 134.4 196 37.8
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 7.6e-29 131.3 159 49.1
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 2.2e-28 129.8 174 39.1
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 8.4e-28 127.9 101 63.4
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 1.1e-27 127.5 153 43.1
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 1.9e-27 126.7 179 42.5
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 9.2e-27 124.4 177 42.4
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 2.1e-26 123.2 177 38.4
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.3e-25 120.6 181 38.7
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 7.3e-24 114.8 217 34.6
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 9.6e-24 114.4 182 37.4
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 2.8e-23 112.8 103 52.4
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.6e-23 112.5 80 65.0
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 2.2e-20 103.2 79 60.8
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 2.9e-20 102.8 190 34.7
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 3.8e-20 102.4 81 56.8
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 8.4e-20 101.3 71 66.2
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 1.2e-18 97.4 173 34.1
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 6.0e-18 95.1 99 44.4
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 8.7e-17 91.3 156 36.5
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 6.2e-15 85.1 93 46.2
AL6G20580 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 5.4e-11 72.0 42 81.0
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 7.1e-11 71.6 86 50.0
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 1.2e-10 70.9 47 63.8
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 2.1e-10 70.1 156 34.0
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.7e-10 69.7 80 47.5
CARHR243870 Cardamine hirsuta HOM05D001617 ORTHO05D008611 4.6e-10 68.9 56 60.7
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 3.0e-09 66.2 92 35.9


User provided reference genes

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