Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 3.5e-138 495.4 285 100.0
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 1.6e-122 443.4 283 84.5
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 1.6e-122 443.4 283 84.5
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 2.1e-122 443.0 282 78.4
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 1.6e-114 416.8 291 72.2
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 3.9e-113 412.1 290 71.4
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 1.1e-112 410.6 289 72.0
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 1.3e-111 407.1 288 70.5
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 7.7e-109 397.9 289 70.2
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 8.5e-108 394.4 279 71.3
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 1.6e-106 390.2 282 85.8
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 1.2e-80 304.3 286 69.9
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 5.8e-56 222.2 286 49.7
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 1.5e-43 181.0 281 37.0
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 2.1e-42 177.2 290 35.9
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 1.8e-41 174.1 256 37.9
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 2.0e-40 170.6 252 36.5
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 9.9e-40 168.3 277 33.9
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 9.9e-40 168.3 252 37.7
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 6.4e-39 165.6 268 35.4
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 1.9e-38 164.1 254 37.4
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 3.0e-36 156.8 249 36.1
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 5.1e-36 156.0 265 36.2
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 6.7e-36 155.6 263 36.5
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 5.6e-35 152.5 277 33.9
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 7.4e-35 152.1 275 35.3
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 3.6e-34 149.8 277 31.8
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 1.4e-33 147.9 277 31.4
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 3.1e-33 146.7 277 31.4
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 4.0e-33 146.4 277 31.4
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 9.0e-33 145.2 276 31.2
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-32 144.8 255 31.0
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 2.6e-32 143.7 235 34.0
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 2.6e-32 143.7 277 30.7
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 2.6e-32 143.7 277 31.0
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 4.5e-32 142.9 280 42.1
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 5.8e-32 142.5 264 44.3
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 2.2e-31 140.6 265 33.6
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 2.2e-31 140.6 277 30.7
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 4.9e-31 139.4 265 33.6
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 1.8e-28 131.0 278 34.2
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 2.3e-28 130.6 255 33.7
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 7.4e-27 125.6 148 45.9
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 3.7e-26 123.2 265 29.4
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 4.8e-26 122.9 113 57.5
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 4.8e-26 122.9 113 57.5
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 4.8e-26 122.9 113 57.5
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 8.1e-26 122.1 237 32.5
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 2.4e-25 120.6 258 29.8
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 4.0e-25 119.8 252 30.6
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 5.8e-24 115.9 258 30.6
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 1.3e-23 114.8 265 30.9
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.5e-22 110.5 214 32.7
A09p07640 Brassica napus HOM05D003975 ORTHO05D009762 3.2e-22 110.2 103 58.3
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 2.1e-21 107.5 233 30.0
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 2.7e-21 107.1 236 30.5
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 2.3e-20 104.0 153 38.6
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 6.7e-20 102.4 215 30.2
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 6.7e-20 102.4 138 39.9
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 6.7e-20 102.4 153 42.5
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.1e-19 101.7 288 30.2
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 7.4e-19 99.0 148 39.9
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 4.8e-18 96.3 211 30.3
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 4.1e-17 93.2 148 37.2
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 5.3e-17 92.8 148 37.2
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.2e-16 91.7 140 36.4
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 4.5e-16 89.7 145 37.2
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 5.5e-14 82.8 93 44.1
BcaNung01400 Brassica carinata HOM05D003975 ORTHO05D009762 9.3e-14 82.0 85 49.4
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 2.1e-13 80.9 70 50.0
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 2.7e-13 80.5 75 46.7
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 6.7e-12 75.9 142 33.8
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 2.4e-09 67.4 111 35.1
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 2.4e-09 67.4 275 26.5
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.7e-07 61.2 111 32.4
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 2.2e-07 60.8 113 35.4


User provided reference genes

Program Settings