Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 5.6e-98 360.9 178 100.0
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 9.1e-24 114.4 84 70.2
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 9.1e-24 114.4 84 70.2
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 7.7e-23 111.3 84 69.0
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 2.2e-22 109.8 84 67.9
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.2e-22 109.8 84 67.9
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 2.2e-22 109.8 84 67.9
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 8.5e-22 107.8 85 65.9
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 8.5e-22 107.8 84 67.9
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 8.5e-22 107.8 85 65.9
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.1e-21 107.5 84 65.5
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 1.4e-21 107.1 57 86.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.4e-21 107.1 57 86.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.4e-21 107.1 57 86.0
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.9e-21 106.7 84 65.5
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.9e-21 106.7 57 84.2
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.9e-21 106.7 57 87.7
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 2.5e-21 106.3 84 65.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.5e-21 106.3 84 65.5
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.5e-21 106.3 57 86.0
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.5e-21 106.3 57 86.0
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.5e-21 106.3 57 86.0
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 2.5e-21 106.3 57 86.0
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.2e-21 105.5 78 66.7
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.2e-21 105.5 84 65.5
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.2e-21 105.5 84 65.5
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 4.2e-21 105.5 85 64.7
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 5.5e-21 105.1 84 65.5
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 5.5e-21 105.1 57 84.2
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 5.5e-21 105.1 84 65.5
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 5.5e-21 105.1 84 65.5
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 5.5e-21 105.1 84 65.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 5.5e-21 105.1 85 64.7
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.5e-21 105.1 85 64.7
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.5e-21 105.1 85 64.7
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.5e-21 105.1 85 64.7
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 5.5e-21 105.1 57 86.0
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 87.7
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 87.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 7.2e-21 104.8 57 84.2
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 9.4e-21 104.4 84 65.5
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 9.4e-21 104.4 84 64.3
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 9.4e-21 104.4 57 84.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.2e-20 104.0 84 64.3
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-20 104.0 84 64.3
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.2e-20 104.0 57 84.2
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 1.2e-20 104.0 57 84.2
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.2e-20 104.0 57 82.5
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.6e-20 103.6 85 62.4
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.6e-20 103.6 57 86.0
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.6e-20 103.6 84 64.3
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.1e-20 103.2 84 64.3
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.1e-20 103.2 85 63.5
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.1e-20 103.2 84 64.3
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.1e-20 103.2 57 84.2
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.1e-20 103.2 57 84.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.7e-20 102.8 84 64.3
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 84.2
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 84.2
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 80.7
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 80.7
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 82.5
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 82.5
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 84.2
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 2.7e-20 102.8 57 82.5
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.6e-20 102.4 57 82.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 3.6e-20 102.4 57 82.5
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 6.1e-20 101.7 57 82.5
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 7.9e-20 101.3 57 84.2
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.9e-20 101.3 57 80.7
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 7.9e-20 101.3 57 80.7
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 7.9e-20 101.3 78 65.4
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.0e-19 100.9 88 60.2
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.0e-19 100.9 84 60.7
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 1.0e-19 100.9 84 63.1
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-19 100.5 57 78.9
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.4e-19 100.5 84 61.9
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.8e-19 100.1 78 64.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 2.3e-19 99.8 57 80.7
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 2.3e-19 99.8 84 60.7
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.3e-19 99.8 59 78.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 2.3e-19 99.8 84 61.9
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.3e-19 99.8 57 80.7
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.3e-19 99.8 57 80.7
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 2.3e-19 99.8 57 80.7
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 5.1e-19 98.6 84 60.7
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 5.1e-19 98.6 57 80.7
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 6.7e-19 98.2 57 78.9
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.7e-19 98.2 57 77.2
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 6.7e-19 98.2 57 78.9
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 8.8e-19 97.8 57 80.7
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.1e-18 97.4 79 65.8
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.1e-18 97.4 57 78.9
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.5e-18 97.1 57 80.7
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.5e-18 97.1 57 78.9
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.5e-18 97.1 57 78.9
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.5e-18 97.1 84 60.7
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.5e-18 97.1 57 78.9
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.6e-18 96.3 57 78.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.6e-18 96.3 57 78.9
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 4.4e-18 95.5 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 5.7e-18 95.1 84 59.5
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 7.4e-18 94.7 57 73.7
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.3e-17 94.0 52 80.8
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.3e-17 94.0 115 47.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.2e-17 93.2 57 75.4
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 2.0e-15 86.7 56 69.6
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.1e-13 80.9 55 69.1
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.1e-13 80.9 57 63.2
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 3.2e-13 79.3 59 62.7
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 7.2e-13 78.2 56 62.5


User provided reference genes

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