Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 3.5e-163 578.2 281 100.0
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 3.5e-163 578.2 281 100.0
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 7.1e-156 553.9 281 96.1
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 1.6e-155 552.7 281 95.7
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 9.5e-153 543.5 281 94.3
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 9.9e-150 533.5 281 93.2
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 1.0e-146 523.5 281 91.5
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 1.7e-146 522.7 281 90.7
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.0e-146 521.9 275 91.6
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.5e-145 519.6 278 89.6
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.6e-145 517.7 275 89.8
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 9.6e-145 516.9 281 89.7
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 1.1e-143 513.5 275 90.9
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 4.4e-142 508.1 279 89.2
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 2.9e-141 505.4 281 89.7
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 6.4e-141 504.2 281 88.6
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 3.1e-135 485.3 281 85.4
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 4.3e-129 464.9 277 83.0
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 5.3e-119 431.4 282 76.2
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 6.3e-96 354.8 275 62.9
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 4.5e-94 348.6 274 62.0
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 5.9e-94 348.2 283 61.1
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 1.3e-93 347.1 277 61.0
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 8.5e-93 344.4 277 60.6
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.4e-92 343.6 277 60.6
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 1.9e-92 343.2 278 61.2
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 7.2e-92 341.3 276 59.4
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 2.1e-91 339.7 275 60.4
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 6.1e-91 338.2 276 60.1
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 3.9e-90 335.5 275 59.6
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 5.2e-90 335.1 274 60.2
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 5.2e-90 335.1 275 59.3
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 4.4e-89 332.0 281 58.7
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 7.4e-89 331.3 278 59.7
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 3.7e-88 328.9 280 58.9
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 8.2e-88 327.8 274 59.5
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 8.2e-88 327.8 277 57.4
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 8.2e-88 327.8 278 59.4
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 3.1e-87 325.9 280 58.9
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 5.3e-87 325.1 275 58.2
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 7.0e-87 324.7 275 58.2
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 1.2e-86 323.9 276 57.2
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 2.0e-86 323.2 276 59.1
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 2.0e-86 323.2 275 57.8
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 2.6e-86 322.8 283 58.0
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 3.5e-86 322.4 278 57.9
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 7.7e-86 321.2 278 58.6
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 7.7e-86 321.2 276 59.1
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 1.3e-85 320.5 277 59.9
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 2.2e-85 319.7 278 57.9
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 2.9e-85 319.3 278 57.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.9e-85 319.3 267 62.2
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 3.8e-85 318.9 278 56.8
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 5.0e-85 318.5 279 56.6
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 8.5e-85 317.8 275 56.7
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 8.5e-85 317.8 276 56.2
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 1.9e-84 316.6 269 58.4
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 7.2e-84 314.7 277 57.8
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 1.6e-83 313.5 279 57.0
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 3.6e-83 312.4 281 56.6
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 4.7e-83 312.0 276 56.5
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 6.1e-83 311.6 230 64.8
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 8.0e-83 311.2 302 53.0
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 8.0e-83 311.2 278 56.1
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 8.0e-83 311.2 278 55.4
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 1.2e-81 307.4 268 56.7
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.0e-81 306.6 263 57.8
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 2.6e-81 306.2 279 55.6
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 3.3e-81 305.8 277 56.0
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 4.4e-81 305.4 276 52.5
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 1.7e-80 303.5 276 55.8
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 3.1e-79 299.3 277 53.8
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 4.1e-79 298.9 267 59.2
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 4.1e-79 298.9 275 54.9
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 1.6e-78 297.0 350 46.0
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 4.5e-78 295.4 375 45.1
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 2.9e-77 292.7 274 52.9
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 8.5e-77 291.2 270 55.6
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 1.5e-76 290.4 201 64.7
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 1.1e-71 274.2 260 52.7
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 2.0e-70 270.0 235 55.7
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 2.5e-68 263.1 250 54.8
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 2.1e-67 260.0 259 52.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 5.2e-66 255.4 330 46.1
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 8.9e-66 254.6 277 46.6
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 7.5e-65 251.5 205 58.5
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.3e-64 250.8 278 47.8
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 2.1e-59 233.4 497 32.8
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 1.2e-57 227.6 154 66.9
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.1e-52 211.1 176 59.1
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 4.3e-52 209.1 208 47.1
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 9.5e-52 208.0 182 57.1
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 9.8e-49 198.0 216 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 4.9e-48 195.7 224 43.8
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 1.0e-45 188.0 244 38.9
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 1.7e-45 187.2 191 52.4
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 4.4e-41 172.6 221 38.0
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 2.2e-40 170.2 113 64.6
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 2.3e-37 160.2 184 50.0
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 4.9e-32 142.5 216 39.4
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 9.6e-28 128.3 98 58.2
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 8.4e-24 115.2 141 47.5
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 6.6e-21 105.5 145 42.1
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 1.5e-20 104.4 92 55.4
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.6e-19 100.9 78 60.3
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 2.1e-19 100.5 68 63.2
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 3.4e-17 93.2 68 60.3
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 1.9e-15 87.4 199 32.7
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 9.6e-12 75.1 301 23.6
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 1.1e-07 61.6 277 24.9
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 2.4e-07 60.5 46 50.0


User provided reference genes

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