Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.5e-186 654.8 332 100.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.3e-168 594.7 304 97.4
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.6e-168 594.3 304 97.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.0e-166 590.1 304 96.4
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.8e-166 589.3 304 96.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.8e-166 589.3 304 96.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 7.5e-165 583.9 299 96.7
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.4e-163 578.9 304 93.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.7e-153 546.2 304 88.5
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 8.1e-151 537.3 304 91.4
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.1e-150 535.4 301 88.4
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 8.9e-150 533.9 304 85.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.5e-149 533.1 302 87.7
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 4.4e-149 531.6 302 87.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.6e-149 530.8 304 85.2
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 7.6e-149 530.8 304 85.2
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.9e-148 528.9 304 84.9
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.1e-147 526.9 301 87.0
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.1e-147 526.9 302 86.1
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.9e-147 526.2 304 83.9
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 7.1e-147 524.2 302 85.1
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.1e-146 522.7 304 84.2
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.1e-146 522.7 304 83.2
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 4.6e-146 521.5 304 83.9
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.7e-145 519.6 304 83.6
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 3.0e-145 518.8 303 84.8
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.1e-144 516.9 302 83.4
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 4.3e-144 515.0 305 82.0
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 4.3e-144 515.0 304 82.9
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.3e-144 515.0 304 82.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 9.6e-144 513.8 305 82.6
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.6e-143 513.1 305 83.6
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 4.7e-143 511.5 304 82.9
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 8.1e-143 510.8 305 81.6
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.1e-142 510.4 302 81.8
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.4e-142 509.2 304 81.9
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 3.1e-142 508.8 304 81.2
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.5e-141 506.5 305 81.0
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 4.4e-141 505.0 304 81.2
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 7.6e-141 504.2 304 79.9
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.7e-140 503.1 305 81.3
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.7e-140 503.1 304 81.9
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.2e-140 502.7 340 74.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.9e-140 501.5 302 80.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 6.4e-140 501.1 304 80.9
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.4e-140 501.1 305 81.0
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 6.4e-140 501.1 305 81.6
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.4e-139 500.0 308 79.2
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-139 500.0 303 81.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.9e-139 499.6 304 79.9
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.4e-139 499.2 304 79.3
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 3.2e-139 498.8 306 80.1
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 4.2e-139 498.4 304 79.9
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 5.4e-139 498.0 304 79.3
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 5.4e-139 498.0 301 80.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 9.3e-139 497.3 305 80.0
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.6e-138 496.5 304 78.6
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.7e-138 495.7 302 79.8
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.6e-138 495.0 302 79.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 4.6e-138 495.0 308 79.5
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.3e-137 492.7 304 78.0
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 3.0e-137 492.3 303 78.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 3.9e-137 491.9 305 79.3
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.1e-137 491.5 318 77.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 5.1e-137 491.5 297 80.8
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 5.1e-137 491.5 304 77.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 1.5e-136 490.0 304 78.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 4.3e-136 488.4 304 77.3
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.6e-136 488.0 304 78.6
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.3e-135 486.9 304 78.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-135 486.5 318 77.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 4.8e-135 485.0 300 79.7
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 6.2e-135 484.6 304 75.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 6.2e-135 484.6 305 78.7
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.1e-134 483.8 341 71.6
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 5.3e-134 481.5 304 78.6
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 9.0e-134 480.7 307 76.2
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.6e-133 479.2 307 75.6
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.3e-132 476.9 307 75.2
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-132 476.9 296 80.1
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.7e-132 476.5 307 75.6
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-132 476.5 296 80.1
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 4.9e-132 474.9 345 69.0
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.4e-132 474.2 346 69.4
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.4e-131 472.6 304 75.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.2e-130 470.3 304 76.3
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 7.9e-130 467.6 304 75.0
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 3.0e-129 465.7 374 66.0
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 4.3e-128 461.8 304 75.0
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.1e-127 459.5 293 77.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 8.1e-127 457.6 302 72.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 5.3e-126 454.9 294 74.8
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.0e-125 453.0 304 72.0
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 8.2e-119 431.0 304 70.7
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.4e-118 429.5 307 68.4
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 2.6e-117 426.0 248 83.5
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.2e-116 422.9 300 70.0
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 6.5e-116 421.4 248 81.0
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 6.5e-116 421.4 305 67.2
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 8.4e-116 421.0 309 65.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.9e-115 419.9 247 83.8
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 8.7e-113 411.0 244 80.7
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.5e-112 410.2 248 79.0
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.4e-102 377.1 241 75.1
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.2e-101 374.0 278 66.9
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.1e-99 367.5 305 65.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.9e-99 366.7 292 65.1
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.2e-98 364.0 342 59.6
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 3.6e-98 362.5 223 81.6
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.3e-95 354.0 306 61.4
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.9e-91 340.1 299 60.5
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.4e-89 334.0 188 83.0
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 2.3e-68 263.5 305 48.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 9.5e-67 258.1 182 69.2
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 6.1e-66 255.4 194 70.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.8e-63 246.5 301 48.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 4.9e-63 245.7 248 50.4
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 8.6e-60 235.0 133 81.2
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.6e-58 230.7 136 80.1
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.2e-53 214.5 129 77.5
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.3e-47 194.5 213 48.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-34 150.2 148 50.0
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-32 143.7 105 72.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.4e-32 143.3 104 68.3
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 7.6e-32 142.1 105 71.4
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.4e-30 137.9 105 69.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.9e-30 137.5 72 97.2
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-28 131.0 98 70.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-28 131.0 98 70.4
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.7e-28 128.6 107 65.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-27 127.5 98 68.4
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 2.4e-25 120.6 85 72.9
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.4e-25 120.6 187 46.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 9.9e-24 115.2 66 92.4
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.5e-21 106.7 98 53.1
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.3e-19 99.8 61 82.0
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 9.0e-17 92.0 68 67.6
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.4e-16 90.1 62 74.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.4e-14 84.0 176 38.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 4.2e-14 83.2 50 84.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 4.2e-14 83.2 51 80.4
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 9.3e-14 82.0 47 89.4
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.3e-12 78.2 49 75.5
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.8e-12 77.8 49 75.5
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 6.4e-07 59.3 55 54.5


User provided reference genes

Program Settings