Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.2e-270 934.1 466 100.0
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 8.5e-223 776.9 385 100.0
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 8.2e-218 760.4 401 95.0
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 9.5e-198 693.7 399 89.0
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 4.4e-195 684.9 402 88.1
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.4e-185 652.5 406 83.5
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-184 649.8 414 83.1
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.0e-183 647.1 378 88.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 2.3e-183 646.0 410 82.9
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-182 642.9 411 83.0
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.4e-180 636.7 414 81.4
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.8e-180 634.4 406 82.0
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 2.6e-179 632.5 427 79.9
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 5.8e-179 631.3 429 79.0
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 6.6e-175 617.8 411 80.8
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 3.3e-174 615.5 411 79.3
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 6.8e-172 607.8 409 78.2
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 9.3e-161 570.9 408 73.8
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 3.0e-151 539.3 417 68.1
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.6e-144 516.9 392 68.4
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 9.6e-142 507.7 408 64.0
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.3e-141 507.3 394 66.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.1e-141 506.5 339 73.2
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 3.7e-141 505.8 392 65.6
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.7e-141 505.8 398 66.3
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 4.8e-141 505.4 391 66.0
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 3.1e-140 502.7 391 65.2
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 5.3e-140 501.9 293 80.9
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.2e-139 500.7 356 70.2
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.6e-139 499.6 392 65.8
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 5.8e-139 498.4 387 64.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 5.8e-139 498.4 393 64.9
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.0e-138 497.7 396 65.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.3e-138 497.3 403 63.0
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 3.8e-138 495.7 408 62.5
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 6.5e-138 495.0 378 66.1
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 6.5e-138 495.0 403 64.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 8.4e-138 494.6 390 66.9
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.4e-137 493.8 308 75.6
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.9e-137 493.4 405 63.2
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 5.5e-137 491.9 391 63.9
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 7.1e-137 491.5 399 63.7
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 7.1e-137 491.5 292 79.1
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 1.2e-136 490.7 328 71.3
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-136 490.3 401 62.6
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 2.1e-136 490.0 387 65.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 3.5e-136 489.2 297 77.8
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.5e-136 489.2 386 64.2
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 6.0e-136 488.4 297 78.5
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 7.9e-136 488.0 328 71.0
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 7.9e-136 488.0 321 72.9
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.9e-136 488.0 396 63.4
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.0e-135 486.1 306 76.1
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 3.0e-135 486.1 386 64.8
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 5.1e-135 485.3 292 78.1
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 6.7e-135 485.0 394 62.7
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.7e-135 484.6 306 75.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.1e-134 484.2 390 64.9
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.1e-134 484.2 306 76.1
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.3e-134 482.3 398 62.8
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 7.4e-134 481.5 374 65.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 9.6e-134 481.1 399 62.7
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 9.6e-134 481.1 388 63.4
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.1e-133 479.9 400 62.8
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 4.8e-133 478.8 396 63.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.2e-133 478.4 292 76.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 8.2e-133 478.0 378 64.6
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 8.2e-133 478.0 291 79.0
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.8e-132 476.9 295 76.6
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.1e-129 467.6 367 65.7
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.0e-127 461.1 378 64.3
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.5e-126 456.4 295 73.6
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.3e-126 456.1 381 62.7
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 5.7e-126 455.3 386 62.2
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.6e-125 453.8 283 77.0
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 4.8e-125 452.2 291 76.3
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.4e-124 450.7 293 74.7
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 2.4e-124 449.9 326 65.6
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 4.1e-124 449.1 372 61.6
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 4.1e-124 449.1 281 76.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.2e-123 447.6 328 67.4
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.9e-121 440.3 281 73.7
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 7.9e-120 434.9 290 68.6
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.3e-119 433.3 292 70.5
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.5e-118 429.9 294 67.7
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 4.3e-118 429.1 256 80.9
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 5.7e-118 428.7 295 68.8
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 9.7e-118 427.9 401 58.6
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-116 424.1 260 83.8
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 5.3e-116 422.2 389 57.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.0e-115 420.2 297 67.3
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 4.5e-115 419.1 356 60.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.8e-114 416.0 349 63.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 4.7e-112 409.1 391 55.5
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.7e-112 409.1 291 64.9
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 3.9e-111 406.0 384 54.9
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.5e-110 404.1 306 67.3
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.6e-110 403.3 348 62.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.6e-110 403.3 348 62.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.6e-110 403.3 348 62.6
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 3.1e-108 396.4 241 78.0
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 7.0e-108 395.2 289 73.7
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.6e-107 393.3 281 69.4
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.0e-106 391.3 292 63.0
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.7e-106 390.6 241 77.2
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 6.5e-106 388.7 236 79.7
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.5e-106 388.3 322 58.4
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 1.5e-105 387.5 300 62.0
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 7.2e-105 385.2 408 53.9
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 9.4e-105 384.8 258 74.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.2e-104 384.4 296 66.9
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.4e-103 380.9 300 61.0
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 2.2e-101 373.6 339 60.2
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.8e-101 372.5 322 57.5
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 5.3e-100 369.0 402 52.7
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 3.5e-99 366.3 400 51.2
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.7e-94 349.0 291 58.8
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 9.8e-94 348.2 306 61.1
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.7e-93 346.3 427 48.5
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 4.8e-93 345.9 249 66.7
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 8.3e-93 345.1 289 59.9
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.4e-92 344.4 212 77.8
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.7e-91 338.6 378 51.9
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 6.5e-90 335.5 211 76.8
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 3.2e-89 333.2 371 53.6
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 3.2e-89 333.2 266 60.2
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.4e-87 327.8 333 54.1
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.0e-86 323.9 336 52.1
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.5e-81 307.8 217 70.0
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.2e-75 288.1 188 78.2
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.8e-75 285.4 200 67.0
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 8.6e-74 282.0 353 48.4
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 7.3e-73 278.9 210 65.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.8e-71 274.2 158 79.1
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.9e-69 266.2 295 51.2
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.2e-68 263.5 334 47.0
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 5.4e-68 262.7 169 73.4
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 7.8e-67 258.8 280 50.7
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.7e-66 257.7 232 61.2
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.7e-66 257.7 270 54.8
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.5e-65 254.6 160 78.1
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 8.9e-63 245.4 154 71.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 2.9e-61 240.4 289 42.6
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.7e-59 233.8 161 68.3
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 4.6e-59 233.0 170 63.5
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 5.2e-55 219.5 207 63.8
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.5e-54 218.0 225 56.9
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 5.8e-54 216.1 239 48.1
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.3e-53 214.9 122 82.0
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.4e-52 211.5 252 50.4
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.6e-51 206.5 148 67.6
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.7e-50 204.5 250 50.4
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.3e-50 204.1 151 63.6
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.9e-49 201.1 133 69.9
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.6e-48 198.0 274 44.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.4e-44 184.9 136 61.0
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-42 178.7 175 51.4
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.3e-40 171.8 149 55.7
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 7.6e-38 162.5 195 50.3
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 3.8e-37 160.2 129 62.0
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 3.8e-37 160.2 389 34.4
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 9.3e-36 155.6 180 52.8
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.4e-31 141.7 82 74.4
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 5.1e-26 123.2 141 45.4
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.1e-24 115.9 81 67.9
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 7.6e-22 109.4 72 72.2
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.3e-21 108.6 70 78.6
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 1.7e-21 108.2 102 53.9
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.9e-20 104.8 124 46.0
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-17 95.1 142 45.1
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.6e-16 91.7 150 39.3
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 6.9e-15 86.3 142 43.0
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 1.5e-14 85.1 52 80.8
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 1.5e-14 85.1 169 35.5
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.5e-14 85.1 51 70.6
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-13 81.3 56 69.6
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.8e-13 80.5 142 39.4
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 1.1e-12 79.0 143 37.1
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.2e-11 75.5 51 60.8
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.3e-10 72.0 152 36.2
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.6e-08 65.1 43 81.4
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 3.1e-07 60.8 45 62.2


User provided reference genes

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