Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03423 Brassica carinata HOM05D003067 ORTHO05D009378 8.8e-162 573.5 286 100.0
A01p07190 Brassica napus HOM05D003067 ORTHO05D009378 3.2e-140 501.9 286 87.1
BraA01t00670Z Brassica rapa HOM05D003067 ORTHO05D009378 7.2e-140 500.7 286 87.1
C01p07950 Brassica napus HOM05D003067 ORTHO05D009378 4.8e-136 488.0 286 85.0
BolC1t00782H Brassica oleracea HOM05D003067 ORTHO05D009378 4.8e-136 488.0 286 85.0
BcaC09g51887 Brassica carinata HOM05D003067 ORTHO05D009378 5.4e-135 484.6 286 84.6
Sp7g28870 Schrenkiella parvula HOM05D003067 ORTHO05D009378 3.6e-123 445.3 287 78.7
Thhalv10025917m.g Eutrema salsugineum HOM05D003067 ORTHO05D009378 2.6e-121 439.1 286 75.9
AL7G21080 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 4.6e-118 428.3 287 74.2
Carub.0007s0954 Capsella rubella HOM05D003067 ORTHO05D009378 5.4e-111 404.8 287 72.1
THA.LOC104803568 Tarenaya hassleriana HOM05D003067 ORTHO05D009378 9.9e-81 304.3 291 54.0
AT4G30993 Arabidopsis thaliana HOM05D003067 ORTHO05D009378 2.2e-80 303.1 206 72.3
CARHR238890 Cardamine hirsuta HOM05D003067 ORTHO05D009378 5.8e-65 251.9 168 75.0
QL02p092630 Quercus lobata HOM05D003067 ORTHO05D009378 9.6e-60 234.6 305 43.9
Atru.chr7.146 Acer truncatum HOM05D003067 ORTHO05D009378 7.2e-55 218.4 280 42.5
Ciclev10009097m.g Citrus clementina HOM05D003067 ORTHO05D009378 3.6e-54 216.1 290 42.4
CiPaw.16G115000 Carya illinoinensis HOM05D003067 ORTHO05D009378 7.9e-54 214.9 293 42.7
Haze_19237 Corylus avellana HOM05D003067 ORTHO05D009378 1.3e-53 214.2 326 39.0
Cfa020848 Carpinus fangiana HOM05D003067 ORTHO05D007251 1.8e-53 213.8 275 44.0
Thecc.09G033900 Theobroma cacao HOM05D003067 ORTHO05D009378 4.3e-52 209.1 292 41.4
Potri.018G110300 Populus trichocarpa HOM05D003067 ORTHO05D009378 3.7e-51 206.1 299 39.8
Eucgr.C00366 Eucalyptus grandis HOM05D003067 ORTHO05D009378 1.4e-50 204.1 297 39.7
Prupe.7G260000 Prunus persica HOM05D003067 ORTHO05D009378 4.1e-50 202.6 287 41.1
Hma1.2p1_0028F.1_g017380 Hydrangea macrophylla HOM05D003067 ORTHO05D009378 2.0e-49 200.3 287 41.5
FvH4_1g01190 Fragaria vesca HOM05D003067 ORTHO05D009378 5.9e-49 198.7 291 40.9
RcHm_v2.0_Chr2g0085991 Rosa chinensis HOM05D003067 ORTHO05D009378 5.9e-49 198.7 289 40.1
FAN28G0267 Fragaria x ananassa HOM05D003067 ORTHO05D009378 2.2e-48 196.8 291 40.9
Gohir.D07G030100 Gossypium hirsutum HOM05D003067 ORTHO05D009378 3.2e-47 193.0 291 38.8
TWI34G0508 Tripterygium wilfordii HOM05D003067 ORTHO05D009378 1.6e-46 190.7 304 38.8
Gorai.001G031300 Gossypium raimondii HOM05D003067 ORTHO05D009378 1.0e-45 188.0 292 38.7
Gohir.A07G026200 Gossypium hirsutum HOM05D003067 ORTHO05D009378 1.4e-45 187.6 291 38.1
Cc06_g15260 Coffea canephora HOM05D003067 ORTHO05D009378 1.8e-45 187.2 302 39.7
GSVIVG01003733001 Vitis vinifera HOM05D003067 ORTHO05D009378 2.3e-45 186.8 279 38.7
Medtr2g450220 Medicago truncatula HOM05D003067 ORTHO05D009378 3.0e-45 186.4 298 37.2
MBI14_g05269_MAGBIO Magnolia biondii HOM05D003067 ORTHO05D009378 1.5e-44 184.1 280 39.6
Dinv41400 Davidia involucrata HOM05D003067 ORTHO05D009378 5.7e-44 182.2 271 39.5
PGR142G2789 Punica granatum HOM05D003067 ORTHO05D009378 1.3e-43 181.0 304 36.8
Potri.006G187500 Populus trichocarpa HOM05D003067 ORTHO05D009378 3.7e-43 179.5 300 36.3
Nn2g12305 Nelumbo nucifera HOM05D003067 ORTHO05D009378 4.8e-43 179.1 295 38.0
CANSAT11G2322 Cannabis sativa HOM05D003067 ORTHO05D009378 1.8e-42 177.2 296 35.8
CsaV3_2G003640 Cucumis sativus L. HOM05D003067 ORTHO05D009378 1.2e-41 174.5 289 34.9
ClCG02G017140 Citrullus lanatus HOM05D003067 ORTHO05D009378 1.5e-41 174.1 312 34.0
Aqoxy7G03467 Aquilegia oxysepala HOM05D003067 ORTHO05D009378 1.7e-40 170.6 288 35.8
Oeu021253.1 Olea europaea HOM05D003067 ORTHO05D009378 1.1e-39 167.9 297 35.4
CDE06G1077 Ceratophyllum demersum HOM05D003067 ORTHO05D009378 3.2e-39 166.4 300 35.3
COL.COLO4_18774 Corchorus olitorius HOM05D003067 ORTHO05D009378 9.4e-39 164.9 276 37.3
Nitab4.5_0001478g0120 Nicotiana tabacum HOM05D003067 ORTHO05D009378 4.7e-38 162.5 292 34.2
Os06g0183700 Oryza sativa ssp. japonica HOM05D003067 ORTHO05D009378 7.9e-38 161.8 300 34.0
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.0e-37 161.4 291 36.4
CAN.G551.28 Capsicum annuum HOM05D003067 ORTHO05D009378 3.0e-37 159.8 296 33.8
MELO3C004431.2 Cucumis melo HOM05D003067 ORTHO05D009378 3.9e-37 159.5 320 33.1
MSTRG.6118 Avicennia marina HOM05D003067 ORTHO05D009378 5.2e-37 159.1 293 35.2
ATR1153G020 Amborella trichopoda HOM05D003067 ORTHO05D009378 1.1e-36 157.9 284 35.9
Actinidia38680 Actinidia chinensis HOM05D003067 ORTHO05D009378 2.0e-36 157.1 249 38.6
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 2.8e-35 153.3 237 38.8
Sabra18G0093300 Salix brachista HOM05D003067 ORTHO05D009378 6.3e-35 152.1 364 30.8
HanXRQChr05g0133261 Helianthus annuus HOM05D003067 ORTHO05D009378 1.1e-34 151.4 291 33.3
Migut.J01329 Erythranthe guttata HOM05D003067 ORTHO05D009378 2.4e-34 150.2 291 34.0
Lj6g0006451 Lotus japonicus HOM05D003067 ORTHO05D009378 4.1e-34 149.4 292 32.9
Duzib150G0133 Durio zibethinus HOM05D003067 ORTHO05D009378 3.5e-33 146.4 228 37.3
Manes.14G112000 Manihot esculenta HOM05D003067 ORTHO05D009378 1.0e-32 144.8 224 37.5
HPP92_017493 Vanilla planifolia HOM05D003067 ORTHO05D009378 2.9e-32 143.3 286 35.3
Oeu043496.1 Olea europaea HOM05D003067 ORTHO05D009378 6.5e-32 142.1 291 32.0
Zm00001eb374750 Zea mays HOM05D003067 ORTHO05D009378 1.9e-31 140.6 284 33.1
Oeu043497.1 Olea europaea HOM05D003067 ORTHO05D009378 4.2e-31 139.4 288 33.0
Sopen12g005120 Solanum pennellii HOM05D003067 ORTHO05D009378 4.2e-31 139.4 248 34.3
AL2G22600 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 1.2e-30 137.9 100 68.0
AL6G46700 Arabidopsis lyrata HOM05D003067 ORTHO05D009378 1.6e-30 137.5 100 68.0
Solyc12g010230.2 Solanum lycopersicum HOM05D003067 ORTHO05D009378 4.7e-30 136.0 255 34.1
Peaxi162Scf00108g00714 Petunia axillaris HOM05D003067 ORTHO05D009378 1.4e-29 134.4 296 31.1
SGA_v2.0_scaffold265G46124 Striga asiatica HOM05D003067 ORTHO05D009378 5.2e-29 132.5 301 30.9
FAN19G0469 Fragaria x ananassa HOM05D003067 ORTHO05D009378 4.4e-28 129.4 173 43.4
Nitab4.5_0002315g0060 Nicotiana tabacum HOM05D003067 ORTHO05D009378 4.4e-28 129.4 282 30.9
Cpa.g.sc46.125 Carica papaya HOM05D003067 ORTHO05D009378 9.7e-28 128.3 202 37.1
SalBow1G0452 Salvia bowleyana HOM05D003067 ORTHO05D009378 1.7e-27 127.5 294 31.0
Lsat_1_v5_gn_8_59821 Lactuca sativa HOM05D003067 ORTHO05D009378 2.4e-26 123.6 284 29.9
BolC4t23558H Brassica oleracea HOM05D003067 ORTHO05D009378 3.2e-23 113.2 142 50.7
MD02G1010100 Malus domestica HOM05D003067 ORTHO05D009378 8.0e-22 108.6 205 32.2
C04p20200 Brassica napus HOM05D003067 ORTHO05D009378 8.8e-21 105.1 107 58.9
Glyma.15G205500 Glycine max HOM05D003067 ORTHO05D009378 1.2e-20 104.8 228 32.5
vmacro06093 Vaccinium macrocarpon HOM05D003067 ORTHO05D009378 9.8e-20 101.7 266 32.0
DCAR_014819 Daucus carota HOM05D003067 ORTHO05D009378 3.7e-19 99.8 265 31.7
Aa31LG2G19330 Aethionema arabicum HOM05D003067 ORTHO05D009378 5.4e-18 95.9 112 48.2
PGSC0003DMG400007894 Solanum tuberosum HOM05D003067 ORTHO05D009378 4.5e-17 92.8 179 36.3
MD02G1010000 Malus domestica HOM05D003067 ORTHO05D009378 3.6e-14 83.2 93 46.2
A08p18930 Brassica napus HOM05D003067 ORTHO05D009378 4.7e-14 82.8 64 73.4
GSVIVG01003739001 Vitis vinifera HOM05D003067 ORTHO05D009378 2.4e-10 70.5 59 55.9
Aa31LG2G19340 Aethionema arabicum HOM05D003067 ORTHO05D009378 1.2e-09 68.2 67 56.7
CSS0014498 Camellia sinensis var. sinensis HOM05D003067 ORTHO05D009378 1.2e-06 58.2 156 28.2


User provided reference genes

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