Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 7.5e-79 297.4 176 100.0
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 7.5e-79 297.4 176 100.0
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-77 293.1 176 87.5
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.1e-74 283.5 178 87.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.1e-74 283.5 178 87.1
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 8.8e-72 273.9 176 81.8
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-71 273.5 183 79.8
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.0e-71 272.7 176 81.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 3.1e-69 265.4 177 79.7
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 4.1e-69 265.0 177 79.1
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.3e-67 260.0 178 77.5
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.7e-67 259.6 178 77.5
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.7e-67 259.6 176 76.7
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 2.3e-67 259.2 178 77.5
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 2.3e-67 259.2 178 77.5
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.0e-67 258.1 179 77.1
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.2e-66 255.4 178 77.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 4.2e-66 255.0 178 81.5
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.8e-62 242.3 184 71.7
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 7.5e-55 217.6 174 66.1
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.2e-53 212.2 183 63.4
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-48 197.2 173 62.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 3.1e-48 195.7 176 59.1
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.2e-48 194.9 180 66.1
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 8.9e-48 194.1 176 63.1
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 8.9e-48 194.1 175 61.1
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 1.2e-47 193.7 179 60.9
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.0e-47 193.0 179 60.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.0e-47 193.0 179 59.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.0e-47 193.0 180 58.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-47 192.6 171 61.4
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-47 192.6 171 61.4
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 2.6e-47 192.6 171 61.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.4e-47 192.2 176 59.7
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.4e-47 192.2 179 60.3
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.4e-47 191.8 176 59.7
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 5.8e-47 191.4 178 60.7
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 5.8e-47 191.4 183 58.5
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.3e-46 190.3 176 59.1
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.3e-46 190.3 176 59.1
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-46 190.3 173 60.1
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.2e-46 189.5 173 59.5
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.9e-46 189.1 174 61.5
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.9e-46 189.1 174 58.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.7e-46 188.7 173 59.0
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 4.9e-46 188.3 176 58.5
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 6.4e-46 188.0 174 59.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 6.4e-46 188.0 174 59.8
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.4e-46 188.0 135 71.9
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 8.3e-46 187.6 179 58.1
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 8.3e-46 187.6 179 58.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 8.3e-46 187.6 175 58.9
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.1e-45 187.2 177 58.2
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.1e-45 187.2 177 58.8
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.4e-45 186.8 177 58.8
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.9e-45 186.4 177 57.1
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.4e-45 186.0 177 59.3
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 4.1e-45 185.3 188 57.4
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 7.0e-45 184.5 176 57.4
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 7.0e-45 184.5 173 59.0
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.0e-45 184.5 173 57.8
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 7.0e-45 184.5 172 58.7
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 7.0e-45 184.5 173 57.8
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 9.2e-45 184.1 172 57.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 9.2e-45 184.1 182 58.2
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 9.2e-45 184.1 170 60.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.2e-45 184.1 172 58.1
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.2e-44 183.7 186 56.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.2e-44 183.7 173 56.6
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.6e-44 183.3 173 57.8
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.6e-44 183.3 176 59.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.6e-44 183.3 181 55.8
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 2.0e-44 183.0 176 57.4
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 2.0e-44 183.0 176 57.4
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 2.0e-44 183.0 131 71.0
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 2.0e-44 183.0 177 63.3
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 2.7e-44 182.6 187 61.5
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 6.0e-44 181.4 179 59.8
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 6.0e-44 181.4 173 59.5
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 7.8e-44 181.0 192 55.7
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 7.8e-44 181.0 177 55.9
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 7.8e-44 181.0 173 58.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.3e-43 180.3 184 54.9
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 2.3e-43 179.5 180 54.4
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 3.0e-43 179.1 183 55.2
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.9e-43 178.7 175 57.1
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 3.9e-43 178.7 175 57.1
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.0e-43 178.3 175 57.1
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.6e-43 177.9 172 55.8
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.5e-42 176.8 179 55.3
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.5e-42 176.0 174 56.3
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.5e-42 176.0 180 54.4
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 2.5e-42 176.0 127 70.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 3.3e-42 175.6 196 53.1
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.3e-42 175.6 173 56.6
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 5.6e-42 174.9 173 56.6
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 7.3e-42 174.5 179 53.1
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 9.5e-42 174.1 173 55.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.6e-41 173.3 180 57.2
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 2.1e-41 172.9 132 67.4
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 3.6e-41 172.2 180 56.7
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 4.7e-41 171.8 132 66.7
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 6.2e-41 171.4 173 56.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.1e-40 169.1 171 51.5
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 4.0e-40 168.7 129 65.9
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.6e-39 166.0 176 55.7
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 4.4e-39 165.2 111 77.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 4.4e-39 165.2 186 50.5
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 7.5e-39 164.5 132 65.9
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.9e-38 162.5 106 72.6
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.7e-38 162.2 173 56.1
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.2e-37 159.1 174 52.9
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.2e-36 157.1 161 57.1
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.0e-35 154.1 162 54.9
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 5.1e-35 151.8 123 57.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 9.5e-34 147.5 90 80.0
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.2e-31 140.6 136 57.4
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 1.2e-31 140.6 144 54.9
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 9.9e-31 137.5 189 40.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.9e-30 135.2 102 64.7
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 4.9e-30 135.2 186 41.4
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 9.2e-29 131.0 100 69.0
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 9.2e-29 131.0 109 59.6
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 2.7e-28 129.4 108 59.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 6.0e-28 128.3 102 66.7
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.1e-27 125.2 103 61.2
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.1e-26 124.0 99 65.7
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 5.6e-26 121.7 101 60.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.2e-25 120.6 101 58.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-25 120.6 101 59.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.2e-25 120.6 71 83.1
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.1e-24 117.5 105 58.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.4e-24 116.3 104 57.7
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 8.4e-22 107.8 110 50.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 3.2e-21 105.9 104 53.8
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-20 103.2 88 65.9
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 3.5e-20 102.4 106 51.9
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 4.6e-20 102.1 106 53.8
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 4.6e-20 102.1 104 49.0
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.7e-19 100.1 82 57.3
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.3e-18 95.9 80 57.5
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 3.3e-18 95.9 110 48.2
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 4.3e-18 95.5 96 47.9
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 7.3e-18 94.7 69 65.2
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 7.3e-18 94.7 128 44.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 4.5e-15 85.5 113 40.7
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 5.8e-15 85.1 92 53.3
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.8e-14 82.4 81 53.1
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-13 80.9 60 68.3
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.9e-13 80.1 94 47.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.4e-13 78.6 63 63.5
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.2e-12 77.4 88 39.8


User provided reference genes

Program Settings