Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03392 Brassica carinata HOM05D000916 ORTHO05D011795 2.7e-35 151.4 73 100.0
BcaC04g21401 Brassica carinata HOM05D000916 ORTHO05D011795 4.5e-22 107.5 53 96.2
BcaC02g08704 Brassica carinata HOM05D000916 ORTHO05D011795 1.0e-21 106.3 53 94.3
BcaC01g02997 Brassica carinata HOM05D000916 ORTHO05D011795 1.7e-21 105.5 53 94.3
BcaC04g21504 Brassica carinata HOM05D000916 ORTHO05D011795 1.1e-20 102.8 53 92.5
C02p27510 Brassica napus HOM05D000916 ORTHO05D011795 1.5e-20 102.4 61 85.2
C02p41330 Brassica napus HOM05D000916 ORTHO05D011795 5.5e-20 100.5 60 85.0
C07p62980 Brassica napus HOM05D000916 ORTHO05D011795 5.5e-20 100.5 60 85.0
BolC7t46709H Brassica oleracea HOM05D000916 ORTHO05D011795 5.5e-20 100.5 60 85.0
BolC9t56071H Brassica oleracea HOM05D000916 ORTHO05D011795 5.5e-20 100.5 60 85.0
C04p51520 Brassica napus HOM05D000916 ORTHO05D011795 1.2e-19 99.4 60 83.3
C03p57340 Brassica napus HOM05D000916 ORTHO05D011795 2.1e-19 98.6 60 83.3
BolC3t18010H Brassica oleracea HOM05D000916 ORTHO05D011795 2.1e-19 98.6 60 83.3
C05p09190 Brassica napus HOM05D000916 ORTHO05D011795 2.8e-19 98.2 60 81.7
BolC9t55962H Brassica oleracea HOM05D000916 ORTHO05D011795 6.1e-19 97.1 60 81.7
C09p31030 Brassica napus HOM05D000916 ORTHO05D011795 1.4e-18 95.9 60 81.7
A04p07570 Brassica napus HOM05D000916 ORTHO05D011795 4.0e-18 94.4 64 76.6
BcaB08g36567 Brassica carinata HOM05D000916 ORTHO05D008653 7.5e-17 90.1 65 70.8
BcaC04g19381 Brassica carinata HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
A03p66130 Brassica napus HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
A10p19910 Brassica napus HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
C09p56310 Brassica napus HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
BolC9t58500H Brassica oleracea HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
BraA03t15665Z Brassica rapa HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
BraA10t44066Z Brassica rapa HOM05D000916 ORTHO05D008653 9.8e-17 89.7 65 70.8
C09p35340 Brassica napus HOM05D000916 ORTHO05D011795 6.3e-16 87.0 69 66.7
BolC9t56376H Brassica oleracea HOM05D000916 ORTHO05D011795 6.3e-16 87.0 69 66.7
Sp6g24550 Schrenkiella parvula HOM05D000916 ORTHO05D008653 1.3e-13 79.3 65 61.5
Thhalv10013775m.g Eutrema salsugineum HOM05D000916 ORTHO05D008653 1.1e-12 76.3 66 63.6
BolC8t48497H Brassica oleracea HOM05D000916 ORTHO05D011795 1.5e-12 75.9 45 82.2
AT5G19850 Arabidopsis thaliana HOM05D000916 ORTHO05D008653 2.1e-11 72.0 53 66.0
TPR.G38291 Trifolium pratense HOM05D000916 ORTHO05D008653 2.1e-11 72.0 59 55.9
Carub.0006s1820 Capsella rubella HOM05D000916 ORTHO05D008653 4.7e-11 70.9 53 64.2
Medtr5g056200 Medicago truncatula HOM05D000916 ORTHO05D008653 6.1e-11 70.5 64 53.1
Prupe.6G143300 Prunus persica HOM05D000916 ORTHO05D008653 6.1e-11 70.5 61 54.1
CARHR193030 Cardamine hirsuta HOM05D000916 ORTHO05D008653 8.0e-11 70.1 53 64.2
Ca_13814_v3 Cicer arietinum L. HOM05D000916 ORTHO05D008653 1.0e-10 69.7 61 52.5
Lj2g0000465 Lotus japonicus HOM05D000916 ORTHO05D008653 1.0e-10 69.7 58 55.2
Psat2g088040 Pisum sativum HOM05D000916 ORTHO05D008653 1.0e-10 69.7 58 55.2
Hund21633 Selenicereus undatus HOM05D000916 ORTHO05D008653 1.4e-10 69.3 61 54.1
Cfa009571 Carpinus fangiana HOM05D000916 ORTHO05D008653 3.1e-10 68.2 65 50.8
FvH4_3g45410 Fragaria vesca HOM05D000916 ORTHO05D008653 3.1e-10 68.2 61 50.8
FAN11G2367 Fragaria x ananassa HOM05D000916 ORTHO05D008653 3.1e-10 68.2 61 50.8
FAN21G1400 Fragaria x ananassa HOM05D000916 ORTHO05D008653 3.1e-10 68.2 61 50.8
FAN25G1294 Fragaria x ananassa HOM05D000916 ORTHO05D008653 3.1e-10 68.2 61 50.8
RcHm_v2.0_Chr5g0083221 Rosa chinensis HOM05D000916 ORTHO05D008653 3.1e-10 68.2 61 50.8
THA.LOC104811067 Tarenaya hassleriana HOM05D000916 ORTHO05D008653 3.1e-10 68.2 58 56.9
Actinidia30433 Actinidia chinensis HOM05D000916 ORTHO05D008653 4.0e-10 67.8 64 51.6
MBI04_g09718_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D008653 4.0e-10 67.8 62 51.6
Thecc.09G208000 Theobroma cacao HOM05D000916 ORTHO05D008653 4.0e-10 67.8 65 53.8
AL6G31370 Arabidopsis lyrata HOM05D000916 ORTHO05D008653 5.2e-10 67.4 53 62.3
COL.COLO4_35043 Corchorus olitorius HOM05D000916 ORTHO05D008653 5.2e-10 67.4 65 53.8
Cpa.g.sc119.56 Carica papaya HOM05D000916 ORTHO05D008653 6.8e-10 67.0 61 49.2
CiPaw.14G135800 Carya illinoinensis HOM05D000916 ORTHO05D008653 6.8e-10 67.0 65 50.8
Duzib168G0456 Durio zibethinus HOM05D000916 ORTHO05D008653 6.8e-10 67.0 65 52.3
ECA248G2975 Erigeron canadensis HOM05D000916 ORTHO05D008653 6.8e-10 67.0 54 57.4
TWI32G0708 Tripterygium wilfordii HOM05D000916 ORTHO05D008653 6.8e-10 67.0 65 49.2
Ciclev10015550m.g Citrus clementina HOM05D000916 ORTHO05D008653 8.9e-10 66.6 61 50.8
Lj1A524T16 Lonicera japonica HOM05D000916 ORTHO05D008653 8.9e-10 66.6 61 54.1
Nn7g35884 Nelumbo nucifera HOM05D000916 ORTHO05D008653 8.9e-10 66.6 54 55.6
Solyc12g098660.3 Solanum lycopersicum HOM05D000916 ORTHO05D008653 8.9e-10 66.6 54 57.4
GSVIVG01025450001 Vitis vinifera HOM05D000916 ORTHO05D008653 8.9e-10 66.6 61 50.8
ATR0737G073 Amborella trichopoda HOM05D000916 ORTHO05D008653 1.2e-09 66.2 60 51.7
Aa31LG9G12530 Aethionema arabicum HOM05D000916 ORTHO05D008653 1.5e-09 65.9 54 55.6
EL10Ac4g10376 Beta vulgaris HOM05D000916 ORTHO05D008653 1.5e-09 65.9 58 53.4
CANSAT54G1745 Cannabis sativa HOM05D000916 ORTHO05D008653 1.5e-09 65.9 59 54.2
AUR62019171 Chenopodium quinoa HOM05D000916 ORTHO05D008653 1.5e-09 65.9 54 57.4
Gohir.A13G210000 Gossypium hirsutum HOM05D000916 ORTHO05D008653 1.5e-09 65.9 58 55.2
Gorai.013G244300 Gossypium raimondii HOM05D000916 ORTHO05D008653 1.5e-09 65.9 58 55.2
Prupe.6G005000 Prunus persica HOM05D000916 ORTHO05D008653 1.5e-09 65.9 61 50.8
Sopen12g033410 Solanum pennellii HOM05D000916 ORTHO05D008653 2.0e-09 65.5 54 55.6
arahy.Tifrunner.gnm1.ann1.SDBE87 Arachis hypogaea HOM05D000916 ORTHO05D008653 2.6e-09 65.1 56 55.4
FAN16G2348 Fragaria x ananassa HOM05D000916 ORTHO05D008653 2.6e-09 65.1 61 49.2
Glyma.18G000300 Glycine max HOM05D000916 ORTHO05D008653 2.6e-09 65.1 59 52.5
MD11G1007800 Malus domestica HOM05D000916 ORTHO05D008653 2.6e-09 65.1 61 50.8
TAR633G1643 Trochodendron aralioides HOM05D000916 ORTHO05D008653 2.6e-09 65.1 58 51.7
CAN.G767.1 Capsicum annuum HOM05D000916 ORTHO05D008653 4.4e-09 64.3 54 55.6
Migut.G01135 Erythranthe guttata HOM05D000916 ORTHO05D008653 4.4e-09 64.3 59 52.5
Eucgr.B03607 Eucalyptus grandis HOM05D000916 ORTHO05D008653 4.4e-09 64.3 59 52.5
Lalb_Chr01g0009441 Lupinus albus HOM05D000916 ORTHO05D008653 4.4e-09 64.3 58 51.7
Nitab4.5_0000978g0180 Nicotiana tabacum HOM05D000916 ORTHO05D008653 4.4e-09 64.3 54 55.6
Nitab4.5_0004758g0020 Nicotiana tabacum HOM05D000916 ORTHO05D008653 4.4e-09 64.3 54 55.6
Oeu000521.1 Olea europaea HOM05D000284 ORTHO05D000805 4.4e-09 64.3 61 50.8
PGSC0003DMG402004581 Solanum tuberosum HOM05D000916 ORTHO05D008653 4.4e-09 64.3 54 55.6
VMungo1383G0463 Vigna mungo HOM05D000916 ORTHO05D008653 4.4e-09 64.3 57 52.6
HanXRQChr11g0344701 Helianthus annuus HOM05D000916 ORTHO05D008653 5.8e-09 63.9 54 55.6
PSO339G1413 Papaver somniferum HOM05D000916 ORTHO05D008653 5.8e-09 63.9 59 50.8
PSO384G1579 Papaver somniferum HOM05D000916 ORTHO05D008653 5.8e-09 63.9 59 50.8
Potri.003G219700 Populus trichocarpa HOM05D000916 ORTHO05D008653 7.5e-09 63.5 65 49.2
Atru.chr3.2085 Acer truncatum HOM05D000916 ORTHO05D008653 9.8e-09 63.2 59 50.8
Os07g0575800 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D008653 9.8e-09 63.2 54 51.9
Pp3c19_19860 Physcomitrium patens HOM05D000916 ORTHO05D008653 9.8e-09 63.2 54 55.6
Ah.04g161500 Amaranthus hybridus HOM05D001490 ORTHO05D008653 1.3e-08 62.8 58 51.7
arahy.Tifrunner.gnm1.ann1.9H9I7P Arachis hypogaea HOM05D000916 ORTHO05D008653 1.3e-08 62.8 56 53.6
Peaxi162Scf00378g00518 Petunia axillaris HOM05D000916 ORTHO05D008653 1.3e-08 62.8 52 55.8
HPP92_001606 Vanilla planifolia HOM05D000916 ORTHO05D008653 1.3e-08 62.8 59 49.2
Zm00001eb325320 Zea mays HOM05D000916 ORTHO05D008653 1.3e-08 62.8 54 51.9
CSS0001504 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 1.7e-08 62.4 61 47.5
Cc03_g10030 Coffea canephora HOM05D000916 ORTHO05D008653 1.7e-08 62.4 54 55.6
Lsat_1_v5_gn_1_67460 Lactuca sativa HOM05D000916 ORTHO05D008653 1.7e-08 62.4 48 54.2
Rhsim01G0184600 Rhododendron simsii HOM05D000916 ORTHO05D008653 1.7e-08 62.4 61 47.5
ClCG02G024330 Citrullus lanatus HOM05D000916 ORTHO05D008653 2.2e-08 62.0 58 50.0
QL01p008693 Quercus lobata HOM05D000916 ORTHO05D008653 2.9e-08 61.6 59 49.2
CSS0014256 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 3.7e-08 61.2 59 49.2
Manes.15G108100 Manihot esculenta HOM05D000916 ORTHO05D008653 3.7e-08 61.2 61 45.9
Sc06g0004240 Simmondsia chinensis HOM05D000916 ORTHO05D008653 3.7e-08 61.2 54 51.9
AUR62000001 Chenopodium quinoa HOM05D000916 ORTHO05D008653 4.9e-08 60.8 54 51.9
Aqoxy2G00552 Aquilegia oxysepala HOM05D000916 ORTHO05D008653 6.4e-08 60.5 62 48.4
Sed0003044 Sechium edule HOM05D000916 ORTHO05D008653 6.4e-08 60.5 65 44.6
SMO304G0056 Selaginella moellendorffii HOM05D000916 ORTHO05D008653 1.4e-07 59.3 59 47.5
CDE10G1189 Ceratophyllum demersum HOM05D000916 ORTHO05D008653 2.4e-07 58.5 62 45.2
CsaV3_4G017470 Cucumis sativus L. HOM05D000916 ORTHO05D008653 2.4e-07 58.5 58 48.3
MELO3C014720.2 Cucumis melo HOM05D000916 ORTHO05D008653 3.2e-07 58.2 58 46.6
SalBow2G3623 Salvia bowleyana HOM05D000916 ORTHO05D008653 3.2e-07 58.2 54 51.9
MSTRG.4278 Avicennia marina HOM05D000916 ORTHO05D008653 4.1e-07 57.8 59 49.2
Gorai.003G126100 Gossypium raimondii HOM05D000916 ORTHO05D011795 4.1e-07 57.8 58 48.3
Gohir.D03G119666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 5.4e-07 57.4 58 48.3
SEGI_04744 Sequoiadendron giganteum HOM05D000916 ORTHO05D008653 1.6e-06 55.8 54 48.1
BolC3t19869H Brassica oleracea HOM05D000916 ORTHO05D011795 7.8e-06 53.5 32 81.2


User provided reference genes

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