Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 6.9e-93 344.0 174 100.0
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 7.1e-82 307.4 224 75.4
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.7e-81 305.4 180 88.9
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 7.9e-81 303.9 180 88.9
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.5e-79 298.9 177 88.7
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-75 286.2 181 85.6
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 3.5e-73 278.5 174 86.2
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 5.1e-72 274.6 230 69.6
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.2e-68 263.5 200 75.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.7e-65 252.3 175 78.9
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-64 250.4 203 69.5
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 4.1e-61 238.4 184 71.7
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-53 213.8 122 91.8
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.2e-52 210.3 181 68.5
C09p11640 Brassica napus HOM05D003379 ORTHO05D003862 5.9e-52 208.0 178 67.4
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 3.2e-50 202.2 119 89.1
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.1e-49 199.5 181 61.9
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 2.6e-47 192.6 185 61.6
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.2e-46 189.5 181 63.0
BolC9t57591H Brassica oleracea HOM05D013459 ORTHO05D018689 1.8e-45 186.4 175 62.9
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.6e-44 182.6 178 62.4
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 8.5e-43 177.6 196 52.0
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.1e-42 177.2 191 54.5
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 4.1e-29 132.1 190 43.7
BcaC09g48308 Brassica carinata HOM05D003379 ORTHO05D003862 5.9e-28 128.3 68 97.1
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.3e-27 126.3 194 41.8
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.1e-26 124.0 188 43.6
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.1e-26 124.0 197 43.1
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 3.3e-26 122.5 193 43.0
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 4.2e-26 122.1 192 40.6
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 5.5e-26 121.7 194 41.2
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.1e-25 119.8 198 39.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.1e-25 119.8 183 41.5
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 8.0e-25 117.9 190 43.2
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.8e-24 116.7 200 40.0
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.8e-24 116.7 193 40.4
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 2.3e-24 116.3 201 39.8
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 4.0e-24 115.5 209 41.1
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 5.2e-24 115.2 195 40.0
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 8.9e-24 114.4 182 41.8
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 8.9e-24 114.4 204 39.7
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 8.9e-24 114.4 195 41.5
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.0e-23 113.2 205 39.0
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.6e-23 112.8 198 38.9
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 5.7e-23 111.7 177 39.5
BolC1t05110H Brassica oleracea HOM05D003379 ORTHO05D003862 2.8e-22 109.4 58 96.6
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 2.8e-22 109.4 181 41.4
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.8e-22 109.4 181 42.0
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.7e-22 109.0 173 42.8
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.7e-22 109.0 189 39.7
C09p60140 Brassica napus HOM05D003379 ORTHO05D003862 8.3e-22 107.8 69 84.1
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 1.1e-21 107.5 206 37.4
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.1e-21 107.5 201 39.3
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.4e-21 107.1 179 40.8
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.8e-21 106.7 198 39.4
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 5.4e-21 105.1 181 40.3
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 7.0e-21 104.8 202 40.1
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 9.2e-21 104.4 194 37.6
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.0e-20 103.2 177 41.2
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.0e-20 103.2 196 37.8
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.7e-20 102.8 197 38.1
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 3.5e-20 102.4 208 35.6
BolC2t08454H Brassica oleracea HOM05D003379 ORTHO05D003862 4.5e-20 102.1 58 89.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 4.5e-20 102.1 204 37.3
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 4.5e-20 102.1 181 39.2
C01p51670 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-19 100.9 53 96.2
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.3e-19 100.5 192 35.4
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.3e-19 99.8 192 38.5
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 2.3e-19 99.8 205 38.0
C08p31050 Brassica napus HOM05D003379 ORTHO05D003862 3.8e-19 99.0 53 92.5
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.0e-19 98.6 202 37.6
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 6.6e-19 98.2 213 34.3
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.6e-19 97.8 188 41.0
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.1e-18 97.4 206 35.0
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.9e-18 96.7 190 37.9
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 2.5e-18 96.3 189 37.0
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.3e-18 95.9 201 38.8
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 4.3e-18 95.5 216 38.0
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 9.5e-18 94.4 191 39.3
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.2e-17 94.0 209 33.0
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.6e-17 93.6 205 37.1
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.8e-17 92.8 176 39.8
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.6e-17 92.4 187 34.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.6e-17 92.4 175 40.0
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 4.7e-17 92.0 204 35.3
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.7e-17 92.0 161 39.8
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 4.7e-17 92.0 201 36.3
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 6.1e-17 91.7 202 34.7
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.3e-16 89.7 201 34.8
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 3.0e-16 89.4 201 37.3
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.0e-16 89.0 174 38.5
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.2e-16 88.6 208 34.6
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 8.9e-16 87.8 192 35.4
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.2e-15 87.4 218 34.4
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.2e-15 87.4 192 35.4
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.5e-15 87.0 188 36.2
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.5e-15 87.0 208 32.7
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.5e-15 87.0 174 37.9
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.5e-15 87.0 204 35.3
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-15 86.7 175 39.4
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.6e-15 86.3 185 36.8
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.6e-15 86.3 192 33.9
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.4e-15 85.9 203 34.5
BolC9t53871H Brassica oleracea HOM05D003379 ORTHO05D003862 4.4e-15 85.5 43 100.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.4e-15 85.5 217 32.7
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 4.4e-15 85.5 199 34.2
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 7.5e-15 84.7 203 34.0
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 7.5e-15 84.7 201 34.8
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 9.8e-15 84.3 183 36.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.2e-14 83.2 200 36.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.9e-14 82.8 201 31.8
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 2.9e-14 82.8 196 34.7
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.9e-14 82.8 184 36.4
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 4.9e-14 82.0 178 36.0
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 6.4e-14 81.6 188 34.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 8.3e-14 81.3 182 35.7
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 8.3e-14 81.3 188 33.5
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.1e-13 80.9 203 34.0
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.1e-13 80.9 183 36.1
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.1e-13 80.9 183 36.1
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.1e-13 80.9 212 32.1
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.8e-13 80.1 203 33.5
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.8e-13 80.1 183 35.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.8e-13 80.1 188 34.0
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.2e-13 79.3 200 31.0
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.2e-13 79.3 185 34.6
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.2e-13 79.3 205 33.2
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 3.2e-13 79.3 217 31.8
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 5.4e-13 78.6 89 49.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 5.4e-13 78.6 89 49.4
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 5.4e-13 78.6 210 33.8
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 7.0e-13 78.2 200 33.0
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 9.2e-13 77.8 186 33.9
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.2e-12 77.4 184 35.9
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-12 77.4 191 33.0
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.2e-12 77.4 206 33.0
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.2e-12 77.4 180 37.2
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.2e-12 77.4 214 31.8
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.6e-12 77.0 126 40.5
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.0e-12 76.6 207 31.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 2.0e-12 76.6 188 33.5
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.0e-12 76.6 199 33.2
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 2.7e-12 76.3 210 31.4
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 3.5e-12 75.9 175 32.0
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 6.0e-12 75.1 139 38.1
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 6.0e-12 75.1 190 32.1
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.0e-12 75.1 190 32.1
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.0e-12 75.1 195 31.3
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 6.0e-12 75.1 207 31.4
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 7.8e-12 74.7 231 30.7
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-11 73.9 189 32.8
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.3e-11 73.9 211 32.2
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 2.3e-11 73.2 194 30.9
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.3e-11 73.2 211 32.2
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.0e-11 72.8 184 34.2
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.1e-10 70.9 179 33.5
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.1e-10 70.9 206 30.6
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.1e-10 70.9 179 35.8
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.5e-10 70.5 89 49.4
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.9e-10 70.1 198 30.3
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.5e-10 69.7 89 47.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.5e-10 69.7 89 47.2
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 4.3e-10 68.9 202 27.7
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.1e-09 66.6 190 32.1
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.1e-09 66.6 89 44.9
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.1e-09 66.6 172 33.1
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.8e-09 66.2 209 29.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.0e-08 62.4 248 27.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.2e-07 60.8 207 27.5
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.5e-07 60.5 238 27.7
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 7.5e-07 58.2 121 38.0
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 7.5e-07 58.2 91 45.1
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 6.4e-06 55.1 232 29.3


User provided reference genes

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