Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 1.8e-131 472.6 248 100.0
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 1.8e-131 472.6 248 100.0
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 5.0e-129 464.5 248 98.4
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 3.3e-117 425.2 248 91.1
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 3.3e-117 425.2 248 91.1
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 1.7e-105 386.3 221 91.9
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 2.1e-95 352.8 252 80.2
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 2.0e-85 319.7 257 70.8
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 4.7e-79 298.5 263 67.7
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 8.0e-79 297.7 264 68.6
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 4.0e-78 295.4 264 68.2
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 8.9e-78 294.3 254 68.1
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 1.7e-76 290.0 263 67.3
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 1.7e-76 290.0 263 67.3
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 2.9e-76 289.3 263 67.3
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 2.6e-69 266.2 242 65.3
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.2e-66 257.3 259 61.4
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 1.3e-60 237.3 262 59.9
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 2.4e-54 216.5 249 57.8
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 4.0e-54 215.7 256 53.5
BcaB01g00240 Brassica carinata HOM05D003173 ORTHO05D003546 5.3e-54 215.3 160 76.9
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 5.3e-54 215.3 258 55.0
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 7.1e-51 204.9 267 48.7
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 1.0e-49 201.1 255 52.2
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 3.9e-49 199.1 263 50.6
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 9.6e-48 194.5 262 50.0
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 3.2e-43 179.5 258 47.7
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 7.1e-43 178.3 256 49.6
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 7.1e-43 178.3 256 48.8
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 9.3e-43 177.9 257 49.4
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 2.1e-42 176.8 212 51.9
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 1.3e-41 174.1 258 48.8
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 7.4e-40 168.3 259 45.9
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 2.8e-39 166.4 259 46.3
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 3.7e-39 166.0 259 46.3
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 4.8e-39 165.6 259 46.3
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 2.4e-38 163.3 276 46.0
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 8.4e-36 154.8 257 46.3
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 3.2e-35 152.9 261 47.1
C06p50010 Brassica napus HOM05D003173 ORTHO05D003546 8.2e-31 138.3 205 48.8
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 1.5e-29 134.0 252 41.7
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 2.8e-23 113.2 239 40.2
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 4.8e-23 112.5 250 38.8
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 5.3e-22 109.0 272 36.0
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.0e-22 108.2 262 36.3
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 1.2e-21 107.8 260 38.5
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 5.9e-21 105.5 250 38.0
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 7.7e-21 105.1 258 35.7
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.9e-20 103.2 255 33.7
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 2.9e-20 103.2 272 35.3
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 3.8e-20 102.8 263 35.4
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 8.5e-20 101.7 252 34.9
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.9e-19 100.5 254 34.3
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 4.2e-19 99.4 252 33.7
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 9.4e-19 98.2 252 33.7
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 7.9e-18 95.1 133 46.6
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 7.9e-18 95.1 252 32.9
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.0e-17 94.7 257 33.5
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 1.4e-17 94.4 261 34.9
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 1.4e-17 94.4 262 36.3
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 1.4e-17 94.4 251 33.1
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 2.3e-17 93.6 260 34.6
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.3e-17 93.6 251 33.5
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 6.7e-17 92.0 291 30.6
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 6.7e-17 92.0 264 33.0
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 8.8e-17 91.7 262 37.0
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 8.8e-17 91.7 266 35.7
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 8.8e-17 91.7 256 36.7
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.0e-16 90.5 263 34.2
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.5e-16 90.1 260 32.3
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 4.3e-16 89.4 265 34.3
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 4.3e-16 89.4 260 35.0
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 5.7e-16 89.0 269 32.7
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.7e-16 89.0 252 32.9
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 9.7e-16 88.2 260 32.7
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 1.7e-15 87.4 293 30.7
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 1.7e-15 87.4 268 33.2
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 2.2e-15 87.0 270 33.7
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 2.2e-15 87.0 268 29.5
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 2.2e-15 87.0 260 34.2
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 2.2e-15 87.0 256 33.6
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 3.7e-15 86.3 255 32.2
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 4.8e-15 85.9 273 33.0
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 1.1e-14 84.7 250 33.2
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 1.4e-14 84.3 277 31.0
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 1.8e-14 84.0 285 33.7
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 1.8e-14 84.0 296 31.8
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.1e-14 83.2 238 31.5
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 3.1e-14 83.2 246 31.7
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 3.1e-14 83.2 203 32.5
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 5.3e-14 82.4 247 30.4
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 5.3e-14 82.4 265 32.5
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 6.9e-14 82.0 246 31.7
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 6.9e-14 82.0 285 29.1
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 6.9e-14 82.0 273 32.2
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 6.9e-14 82.0 278 33.5
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 9.1e-14 81.6 245 33.9
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 1.2e-13 81.3 259 32.8
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 1.2e-13 81.3 250 32.4
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 1.5e-13 80.9 263 34.2
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 1.5e-13 80.9 234 30.3
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 2.0e-13 80.5 280 33.2
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 2.0e-13 80.5 258 30.6
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.0e-13 80.5 283 31.8
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 2.0e-13 80.5 278 31.7
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 2.0e-13 80.5 210 30.5
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 2.0e-13 80.5 269 33.5
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 2.6e-13 80.1 245 30.2
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 3.4e-13 79.7 270 30.4
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 3.4e-13 79.7 252 30.6
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 5.9e-13 79.0 268 32.1
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 7.7e-13 78.6 253 30.0
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 1.3e-12 77.8 256 32.8
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.2e-12 77.0 231 30.3
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 2.2e-12 77.0 258 32.2
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 2.2e-12 77.0 251 31.1
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 2.2e-12 77.0 251 30.7
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 2.9e-12 76.6 231 30.3
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 2.9e-12 76.6 268 30.6
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.9e-12 76.6 268 31.0
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 2.9e-12 76.6 207 35.7
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 3.8e-12 76.3 217 30.0
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 3.8e-12 76.3 247 32.4
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 3.8e-12 76.3 257 32.3
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 5.0e-12 75.9 267 30.7
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 5.0e-12 75.9 264 30.7
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 5.0e-12 75.9 267 28.8
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 6.5e-12 75.5 303 27.7
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 1.4e-11 74.3 258 31.4
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 1.4e-11 74.3 203 33.0
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 1.4e-11 74.3 267 30.0
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.9e-11 73.9 208 34.6
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 2.5e-11 73.6 241 32.0
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 2.5e-11 73.6 257 29.6
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 2.5e-11 73.6 266 30.5
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 2.5e-11 73.6 246 31.7
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 4.2e-11 72.8 276 32.2
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 5.5e-11 72.4 241 31.1
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 9.4e-11 71.6 287 30.0
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 1.6e-10 70.9 247 29.6
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 3.6e-10 69.7 266 27.8
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 3.6e-10 69.7 264 31.8
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 6.1e-10 68.9 253 31.2
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 6.1e-10 68.9 270 27.8
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 6.1e-10 68.9 261 28.4
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 7.9e-10 68.6 273 27.8
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 1.0e-09 68.2 225 32.0
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 1.4e-09 67.8 269 28.6
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 3.0e-09 66.6 190 33.2
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 3.0e-09 66.6 190 26.3
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 1.5e-08 64.3 173 31.2
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 3.3e-08 63.2 255 28.6
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 4.4e-08 62.8 217 33.2
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 4.4e-08 62.8 196 29.1
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 5.7e-08 62.4 252 30.2
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 5.7e-08 62.4 219 29.2
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 7.4e-08 62.0 182 31.9
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 7.4e-08 62.0 182 31.9
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 7.4e-08 62.0 259 28.2
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 9.7e-08 61.6 220 30.5
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 9.7e-08 61.6 220 30.5
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 9.7e-08 61.6 242 28.1
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 1.7e-07 60.8 252 29.4
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 2.2e-07 60.5 270 34.1
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 3.7e-07 59.7 232 31.0
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 4.8e-07 59.3 235 31.5
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 6.3e-07 58.9 175 32.6
Prupe.7G175300 Prunus persica HOM05D003173 ORTHO05D003546 3.1e-06 56.6 225 30.2
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 4.1e-06 56.2 130 39.2
FvH4_1g11060 Fragaria vesca HOM05D003173 ORTHO05D003546 7.0e-06 55.5 199 30.2


User provided reference genes

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