Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03300 Brassica carinata HOM05D001122 ORTHO05D003607 1.3e-73 279.6 139 100.0
BolC9t60205H Brassica oleracea HOM05D001122 ORTHO05D003607 6.2e-44 181.0 96 91.7
BcaC06g31953 Brassica carinata HOM05D001122 ORTHO05D003607 1.2e-39 166.8 99 80.8
C09p74730 Brassica napus HOM05D001122 ORTHO05D003607 1.0e-38 163.7 123 70.7
Sp6g41050 Schrenkiella parvula HOM05D001122 ORTHO05D003607 2.5e-29 132.5 96 68.8
AL6G10230 Arabidopsis lyrata HOM05D001122 ORTHO05D003607 6.2e-28 127.9 96 68.8
CARHR229670 Cardamine hirsuta HOM05D001122 ORTHO05D003607 8.1e-28 127.5 95 66.3
AT5G01800 Arabidopsis thaliana HOM05D001122 ORTHO05D003607 1.2e-26 123.6 94 67.0
Thhalv10014673m.g Eutrema salsugineum HOM05D001122 ORTHO05D003607 4.4e-26 121.7 96 61.5
Carub.0006s0003 Capsella rubella HOM05D001122 ORTHO05D003607 1.7e-25 119.8 88 68.2
Aa31LG5G11660 Aethionema arabicum HOM05D001122 ORTHO05D003607 2.1e-23 112.8 93 60.2
THA.LOC104823315 Tarenaya hassleriana HOM05D001122 ORTHO05D003607 7.1e-16 87.8 97 44.3
THA.LOC104806073 Tarenaya hassleriana HOM05D001122 ORTHO05D003607 9.6e-13 77.4 97 37.1
VMungo0331G1328 Vigna mungo HOM05D001122 ORTHO05D003607 8.1e-12 74.3 95 36.8
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.8e-11 73.2 96 35.4
Ca_19773_v3 Cicer arietinum L. HOM05D001122 ORTHO05D003607 1.5e-10 70.1 95 33.7
Duzib212G0732 Durio zibethinus HOM05D001122 ORTHO05D003607 2.6e-10 69.3 117 31.6
Duzib151G0339 Durio zibethinus HOM05D001122 ORTHO05D003607 7.6e-10 67.8 117 30.8
Lalb_Chr12g0207581 Lupinus albus HOM05D001122 ORTHO05D003607 9.9e-10 67.4 99 37.4
Rhsim05G0229000 Rhododendron simsii HOM05D001122 ORTHO05D003607 9.9e-10 67.4 68 41.2
Sp5g10550 Schrenkiella parvula HOM05D001122 ORTHO05D003607 1.3e-09 67.0 98 35.7
Glyma.18G211900 Glycine max HOM05D001122 ORTHO05D003607 1.7e-09 66.6 97 33.0
Glyma.01G131400 Glycine max HOM05D001122 ORTHO05D003607 2.2e-09 66.2 65 38.5
Lj3g0009835 Lotus japonicus HOM05D001122 ORTHO05D003607 2.2e-09 66.2 95 33.7
Gohir.A10G149300 Gossypium hirsutum HOM05D001122 ORTHO05D003607 2.9e-09 65.9 119 31.1
Gohir.D10G117500 Gossypium hirsutum HOM05D001122 ORTHO05D003607 2.9e-09 65.9 70 38.6
Peaxi162Scf00009g00811 Petunia axillaris HOM05D001122 ORTHO05D003607 2.9e-09 65.9 59 44.1
Solyc10g085430.3 Solanum lycopersicum HOM05D001122 ORTHO05D003607 2.9e-09 65.9 63 42.9
Sopen10g034880 Solanum pennellii HOM05D001122 ORTHO05D003607 2.9e-09 65.9 63 42.9
EL10Ac7g17057 Beta vulgaris HOM05D001122 ORTHO05D003607 3.8e-09 65.5 100 34.0
Glyma.09G277200 Glycine max HOM05D001122 ORTHO05D003607 3.8e-09 65.5 93 34.4
Glyma.19G111500 Glycine max HOM05D001122 ORTHO05D003607 4.9e-09 65.1 84 35.7
Medtr7g072560 Medicago truncatula HOM05D001122 ORTHO05D003607 4.9e-09 65.1 105 31.4
Lj1g0017699 Lotus japonicus HOM05D001122 ORTHO05D003607 6.4e-09 64.7 108 31.5
Psat7g230080 Pisum sativum HOM05D001122 ORTHO05D003607 6.4e-09 64.7 94 34.0
VMungo1383G1340 Vigna mungo HOM05D001122 ORTHO05D003607 6.4e-09 64.7 98 30.6
GSVIVG01030214001 Vitis vinifera HOM05D001122 ORTHO05D003607 6.4e-09 64.7 66 40.9
AUR62029684 Chenopodium quinoa HOM05D001122 ORTHO05D003607 8.4e-09 64.3 100 33.0
Eucgr.A00687 Eucalyptus grandis HOM05D001122 ORTHO05D003607 8.4e-09 64.3 98 31.6
Manes.08G173200 Manihot esculenta HOM05D001122 ORTHO05D003607 8.4e-09 64.3 66 37.9
Prupe.6G290000 Prunus persica HOM05D001122 ORTHO05D003607 8.4e-09 64.3 69 39.1
Thecc.04G154900 Theobroma cacao HOM05D001122 ORTHO05D003607 8.4e-09 64.3 66 40.9
Gorai.011G129400 Gossypium raimondii HOM05D001122 ORTHO05D003607 1.1e-08 63.9 70 38.6
Lalb_Chr13g0291881 Lupinus albus HOM05D001122 ORTHO05D003607 1.1e-08 63.9 63 41.3
PGR031G1876 Punica granatum HOM05D001122 ORTHO05D003607 1.1e-08 63.9 97 32.0
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 1.4e-08 63.5 66 37.9
Haze_21140 Corylus avellana HOM05D001122 ORTHO05D003607 1.4e-08 63.5 66 36.4
TWI77G0482 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 1.4e-08 63.5 66 39.4
Eucgr.K01273 Eucalyptus grandis HOM05D001122 ORTHO05D003607 1.9e-08 63.2 63 41.3
Medtr4g029040 Medicago truncatula HOM05D001122 ORTHO05D003607 1.9e-08 63.2 95 32.6
Os01g0166700 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 1.9e-08 63.2 66 37.9
arahy.Tifrunner.gnm1.ann1.DF4ABA Arachis hypogaea HOM05D001122 ORTHO05D003607 2.4e-08 62.8 99 32.3
arahy.Tifrunner.gnm1.ann1.U3MJA7 Arachis hypogaea HOM05D001122 ORTHO05D003607 2.4e-08 62.8 99 32.3
TWI53G1003 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 2.4e-08 62.8 117 29.1
PGR004G2520 Punica granatum HOM05D001122 ORTHO05D003607 3.2e-08 62.4 68 35.3
Cpa.g.sc86.26 Carica papaya HOM05D001122 ORTHO05D003607 4.2e-08 62.0 72 36.1
MBI15_g26245_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D003607 4.2e-08 62.0 80 28.8
AUR62006354 Chenopodium quinoa HOM05D001122 ORTHO05D003607 5.4e-08 61.6 100 32.0
Ca_07748_v3 Cicer arietinum L. HOM05D001122 ORTHO05D003607 5.4e-08 61.6 109 30.3
Gorai.005G005800 Gossypium raimondii HOM05D001122 ORTHO05D003607 5.4e-08 61.6 66 36.4
Gohir.A02G004800 Gossypium hirsutum HOM05D001122 ORTHO05D003607 7.1e-08 61.2 66 36.4
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 7.1e-08 61.2 61 39.3
BcaB01g00484 Brassica carinata HOM05D001122 ORTHO05D003607 9.3e-08 60.8 99 33.3
A09p44880 Brassica napus HOM05D001122 ORTHO05D003607 9.3e-08 60.8 99 33.3
C08p26930 Brassica napus HOM05D001122 ORTHO05D003607 9.3e-08 60.8 99 33.3
BraA09t39949Z Brassica rapa HOM05D001122 ORTHO05D003607 9.3e-08 60.8 99 33.3
FvH4_6g10220 Fragaria vesca HOM05D001122 ORTHO05D003607 1.2e-07 60.5 66 36.4
Gohir.D02G005100 Gossypium hirsutum HOM05D001122 ORTHO05D003607 1.2e-07 60.5 66 36.4
Atru.chr8.2374 Acer truncatum HOM05D001122 ORTHO05D003607 1.6e-07 60.1 81 29.6
COL.COLO4_30004 Corchorus olitorius HOM05D001122 ORTHO05D003607 1.6e-07 60.1 66 36.4
Lsat_1_v5_gn_9_38061 Lactuca sativa HOM05D001122 ORTHO05D003607 1.6e-07 60.1 117 26.5
Manes.09G115700 Manihot esculenta HOM05D001122 ORTHO05D003607 1.6e-07 60.1 66 36.4
Oeu060447.2 Olea europaea HOM05D001122 ORTHO05D003607 1.6e-07 60.1 66 36.4
PSO339G4844 Papaver somniferum HOM05D001122 ORTHO05D003607 1.6e-07 60.1 79 36.7
Peaxi162Scf00732g00449 Petunia axillaris HOM05D001122 ORTHO05D003607 1.6e-07 60.1 73 31.5
PGR004G2314 Punica granatum HOM05D001122 ORTHO05D003607 1.6e-07 60.1 75 33.3
BolC8t50313H Brassica oleracea HOM05D001122 ORTHO05D003607 2.1e-07 59.7 90 33.3
Os05g0335100 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 2.1e-07 59.7 66 36.4
Hund03784 Selenicereus undatus HOM05D001122 ORTHO05D003607 2.1e-07 59.7 76 38.2
Glyma.18G212100 Glycine max HOM05D001122 ORTHO05D003607 2.7e-07 59.3 77 33.8
vmacro20356 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 2.7e-07 59.3 68 36.8
CSS0038239 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 3.5e-07 58.9 68 32.4
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 3.5e-07 58.9 84 31.0
Migut.J00062 Erythranthe guttata HOM05D001122 ORTHO05D003607 3.5e-07 58.9 76 31.6
SHI12907 Sapria himalayana HOM05D001122 ORTHO05D003607 3.5e-07 58.9 69 33.3
Aqoxy2G00741 Aquilegia oxysepala HOM05D001122 ORTHO05D003607 4.6e-07 58.5 66 34.8
MSTRG.18957 Avicennia marina HOM05D001122 ORTHO05D003607 4.6e-07 58.5 62 37.1
BcaB01g00423 Brassica carinata HOM05D001122 ORTHO05D003607 4.6e-07 58.5 98 32.7
BcaB01g00424 Brassica carinata HOM05D001122 ORTHO05D003607 4.6e-07 58.5 98 32.7
CSS0024307 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 4.6e-07 58.5 66 30.3
CANSAT35G1279 Cannabis sativa HOM05D001122 ORTHO05D003607 4.6e-07 58.5 66 36.4
CiPaw.10G164000 Carya illinoinensis HOM05D001122 ORTHO05D003607 4.6e-07 58.5 66 36.4
Haze_21146 Corylus avellana HOM05D000055 ORTHO05D003607 4.6e-07 58.5 66 33.3
FAN02G3784 Fragaria x ananassa HOM05D001122 ORTHO05D003607 4.6e-07 58.5 66 34.8
HanXRQChr10g0286291 Helianthus annuus HOM05D001122 ORTHO05D003607 4.6e-07 58.5 95 33.7
MD12G1184900 Malus domestica HOM05D001122 ORTHO05D003607 4.6e-07 58.5 115 27.0
PSO384G2267 Papaver somniferum HOM05D001122 ORTHO05D003607 4.6e-07 58.5 65 38.5
Potri.006G107300 Populus trichocarpa HOM05D001122 ORTHO05D003607 4.6e-07 58.5 61 36.1
QL07p032778 Quercus lobata HOM05D001122 ORTHO05D003607 4.6e-07 58.5 71 35.2
RcHm_v2.0_Chr3g0460961 Rosa chinensis HOM05D001122 ORTHO05D003607 4.6e-07 58.5 108 27.8
TPR.G4963 Trifolium pratense HOM05D001122 ORTHO05D003607 4.6e-07 58.5 95 29.5
Zm00001eb123280 Zea mays HOM05D001122 ORTHO05D003607 4.6e-07 58.5 64 35.9
AL5G32190 Arabidopsis lyrata HOM05D001122 ORTHO05D003607 6.0e-07 58.2 99 32.3
AT3G51730 Arabidopsis thaliana HOM05D001122 ORTHO05D003607 6.0e-07 58.2 99 32.3
BraA03t13952Z Brassica rapa HOM05D001122 ORTHO05D003607 6.0e-07 58.2 95 36.8
Phvul.008G084700 Phaseolus vulgaris HOM05D001122 ORTHO05D003607 6.0e-07 58.2 102 28.4
Psat3g120560 Pisum sativum HOM05D001122 ORTHO05D003607 6.0e-07 58.2 63 34.9
PGSC0003DMG400026572 Solanum tuberosum HOM05D001122 ORTHO05D003607 6.0e-07 58.2 73 32.9
GSVIVG01030215001 Vitis vinifera HOM05D001122 ORTHO05D003607 6.0e-07 58.2 70 31.4
Duzib268G0086 Durio zibethinus HOM05D001122 ORTHO05D003607 7.9e-07 57.8 68 33.8
Thhalv10010716m.g Eutrema salsugineum HOM05D001122 ORTHO05D003607 7.9e-07 57.8 63 39.7
FAN05G4057 Fragaria x ananassa HOM05D001122 ORTHO05D003607 7.9e-07 57.8 66 34.8
FAN05G5303 Fragaria x ananassa HOM05D001122 ORTHO05D003607 7.9e-07 57.8 66 34.8
MBI15_g27350_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D003607 7.9e-07 57.8 91 30.8
TPR.G4415 Trifolium pratense HOM05D001122 ORTHO05D003607 7.9e-07 57.8 110 28.2
Zm00001eb350240 Zea mays HOM05D001122 ORTHO05D003607 7.9e-07 57.8 72 30.6
CSS0043268 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 1.0e-06 57.4 68 30.9
CiPaw.09G218500 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.0e-06 57.4 103 27.2
CiPaw.09G218600 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.0e-06 57.4 68 32.4
CiPaw.09G218700 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.0e-06 57.4 66 33.3
ECA247G0333 Erigeron canadensis HOM05D001122 ORTHO05D003607 1.0e-06 57.4 66 34.8
Rhsim04G0122900 Rhododendron simsii HOM05D001122 ORTHO05D003607 1.0e-06 57.4 66 36.4
Solyc09g042700.4 Solanum lycopersicum HOM05D001122 ORTHO05D003607 1.0e-06 57.4 73 32.9
Carub.0005s1807 Capsella rubella HOM05D001122 ORTHO05D003607 1.3e-06 57.0 63 39.7
Potri.016G133400 Populus trichocarpa HOM05D001122 ORTHO05D003607 1.3e-06 57.0 61 34.4
Hund19801 Selenicereus undatus HOM05D001122 ORTHO05D003607 1.3e-06 57.0 78 30.8
SGA_v2.0_scaffold85G26650 Striga asiatica HOM05D001122 ORTHO05D003607 1.3e-06 57.0 62 33.9
Nitab4.5_0009418g0020 Nicotiana tabacum HOM05D001122 ORTHO05D003607 1.7e-06 56.6 76 34.2
Phvul.008G084800 Phaseolus vulgaris HOM05D001122 ORTHO05D003607 1.7e-06 56.6 63 33.3
Sabra06G0083500 Salix brachista HOM05D001122 ORTHO05D001877 1.7e-06 56.6 61 32.8
Sc02g0000830 Simmondsia chinensis HOM05D001122 ORTHO05D003607 1.7e-06 56.6 66 34.8
TWI74G0479 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 1.7e-06 56.6 65 38.5
VMungo1383G1499 Vigna mungo HOM05D001122 ORTHO05D003607 1.7e-06 56.6 63 33.3
A03p48470 Brassica napus HOM05D001122 ORTHO05D003607 2.3e-06 56.2 66 36.4
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 2.3e-06 56.2 75 29.3
FAN09G3749 Fragaria x ananassa HOM05D001122 ORTHO05D003607 2.3e-06 56.2 66 33.3
Lalb_Chr04g0259291 Lupinus albus HOM05D001122 ORTHO05D003607 2.3e-06 56.2 63 34.9
BcaC06g33346 Brassica carinata HOM05D001122 ORTHO05D003607 3.0e-06 55.8 66 36.4
BolC7t45172H Brassica oleracea HOM05D001122 ORTHO05D003607 3.0e-06 55.8 66 36.4
Ah.15g090210 Amaranthus hybridus HOM05D001122 ORTHO05D003607 3.9e-06 55.5 63 38.1
BcaC06g33004 Brassica carinata HOM05D001122 ORTHO05D003607 3.9e-06 55.5 95 36.8
C07p46560 Brassica napus HOM05D001122 ORTHO05D003607 3.9e-06 55.5 66 36.4
CAN.G738.7 Capsicum annuum HOM05D001122 ORTHO05D003607 3.9e-06 55.5 67 34.3
Nitab4.5_0000381g0010 Nicotiana tabacum HOM05D001122 ORTHO05D003607 5.1e-06 55.1 63 36.5
arahy.Tifrunner.gnm1.ann1.J7KKGP Arachis hypogaea HOM05D001122 ORTHO05D003607 6.6e-06 54.7 66 33.3
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 6.6e-06 54.7 62 35.5
Sed0026963 Sechium edule HOM05D001122 ORTHO05D003607 6.6e-06 54.7 113 23.9
Nitab4.5_0010742g0010 Nicotiana tabacum HOM05D001122 ORTHO05D003607 8.7e-06 54.3 66 31.8
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 8.7e-06 54.3 66 31.8
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 8.7e-06 54.3 66 31.8


User provided reference genes

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