Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 8.6e-99 363.6 179 100.0
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 3.6e-97 358.2 179 98.3
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 2.2e-94 349.0 179 97.2
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 3.9e-91 338.2 179 93.9
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 1.9e-90 335.9 180 93.9
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 2.8e-89 332.0 179 92.2
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 9.2e-85 317.0 178 86.5
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 5.6e-82 307.8 179 86.0
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 4.8e-81 304.7 179 84.4
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 4.8e-81 304.7 179 83.2
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 1.3e-78 296.6 176 83.0
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 8.4e-78 293.9 180 80.6
BolC1t02552H Brassica oleracea HOM05D007555 ORTHO05D009521 5.1e-75 284.6 167 86.2
C01p26070 Brassica napus HOM05D007555 ORTHO05D009521 6.2e-73 277.7 167 85.0
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 4.5e-71 271.6 156 85.9
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 1.9e-69 266.2 156 84.6
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 1.2e-68 263.5 146 87.7
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 5.5e-61 238.0 182 70.3
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 5.5e-61 238.0 186 64.5
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 5.0e-54 214.9 186 58.1
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.4e-53 213.4 177 59.9
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 2.5e-53 212.6 134 71.6
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 4.2e-53 211.8 143 66.4
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 5.5e-53 211.5 172 62.2
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 1.6e-52 209.9 161 58.4
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 2.1e-52 209.5 174 54.0
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 2.7e-52 209.1 177 53.1
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 2.7e-52 209.1 160 63.1
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 3.5e-52 208.8 177 59.9
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 3.5e-52 208.8 132 71.2
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 4.6e-52 208.4 183 58.5
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 6.1e-52 208.0 177 59.3
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 1.3e-51 206.8 168 61.9
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 2.3e-51 206.1 174 56.3
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 1.5e-50 203.4 184 53.8
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 1.5e-50 203.4 174 56.3
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 1.9e-50 203.0 164 61.0
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 2.5e-50 202.6 163 63.2
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 2.5e-50 202.6 129 67.4
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 3.3e-50 202.2 162 58.6
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 3.3e-50 202.2 167 61.1
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 3.3e-50 202.2 130 69.2
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 7.4e-50 201.1 174 56.9
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 1.3e-49 200.3 176 54.5
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 1.3e-49 200.3 170 58.8
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 1.3e-49 200.3 138 66.7
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 1.6e-49 199.9 180 57.2
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 2.2e-49 199.5 121 69.4
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 2.2e-49 199.5 183 54.1
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 2.8e-49 199.1 141 61.0
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 4.8e-49 198.4 137 66.4
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 6.3e-49 198.0 143 60.8
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 6.3e-49 198.0 145 63.4
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 8.2e-49 197.6 118 70.3
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 8.2e-49 197.6 161 59.0
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 1.1e-48 197.2 169 55.0
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 1.4e-48 196.8 138 65.2
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 1.4e-48 196.8 158 56.3
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 1.8e-48 196.4 168 55.4
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 2.4e-48 196.1 169 58.6
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 3.1e-48 195.7 163 57.7
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 4.1e-48 195.3 173 54.3
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 4.1e-48 195.3 158 56.3
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 5.3e-48 194.9 142 60.6
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 3.4e-47 192.2 144 59.7
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 7.7e-47 191.0 146 58.2
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 2.2e-46 189.5 167 55.1
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 2.9e-46 189.1 173 53.2
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 2.9e-46 189.1 118 66.1
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 3.8e-46 188.7 168 56.0
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 6.5e-46 188.0 168 54.8
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 1.9e-45 186.4 168 56.0
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.5e-45 186.0 150 55.3
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 7.2e-45 184.5 168 51.8
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 7.2e-45 184.5 168 52.4
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 9.4e-45 184.1 149 58.4
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 1.2e-44 183.7 153 53.6
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 1.2e-44 183.7 153 53.6
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 2.1e-44 183.0 160 57.5
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 6.1e-44 181.4 167 51.5
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 3.0e-43 179.1 159 50.3
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 2.0e-42 176.4 166 51.8
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 5.7e-42 174.9 126 59.5
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 1.3e-41 173.7 127 62.2
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 2.8e-41 172.6 119 63.0
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 5.3e-40 168.3 166 52.4
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 7.7e-39 164.5 195 49.2
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 2.9e-38 162.5 140 52.1
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 3.8e-38 162.2 116 63.8
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 1.9e-37 159.8 124 55.6
Pp3c1_22520 Physcomitrium patens HOM05D007555 ORTHO05D009521 1.8e-35 153.3 155 46.5
Medtr0016s0020 Medicago truncatula HOM05D007555 ORTHO05D009521 5.1e-35 151.8 141 49.6
Lalb_Chr02g0153411 Lupinus albus HOM05D007555 ORTHO05D009521 6.7e-35 151.4 86 76.7
Peaxi162Scf00597g00516 Petunia axillaris HOM05D007555 ORTHO05D009521 2.6e-34 149.4 180 45.6
FAN02G2228 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.8e-25 119.4 88 56.8
TAR636G0687 Trochodendron aralioides HOM05D007555 ORTHO05D009521 2.3e-19 99.8 110 48.2
SEGI_05937 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 3.7e-17 92.4 56 69.6
BolC2t10195H Brassica oleracea HOM05D007555 ORTHO05D009521 1.7e-14 83.6 51 92.2
Lj2A103T67 Lonicera japonica HOM05D007555 ORTHO05D009521 5.5e-13 78.6 175 32.0
COL.COLO4_10316 Corchorus olitorius HOM05D007555 ORTHO05D009521 2.0e-10 70.1 82 48.8
Lalb_Chr02g0153401 Lupinus albus HOM05D007555 ORTHO05D009521 1.7e-09 67.0 59 57.6
CSS0046800 Camellia sinensis var. sinensis HOM05D007555 ORTHO05D009521 5.0e-06 55.5 88 39.8


User provided reference genes

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