Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.5e-129 464.9 229 100.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-125 453.4 224 99.6
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 6.0e-121 437.6 239 91.2
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 3.0e-120 435.3 229 94.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.8e-108 394.4 229 86.9
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.0e-101 371.7 231 80.1
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-97 359.8 229 82.5
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.3e-95 352.1 229 75.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.3e-91 340.1 230 78.7
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.7e-65 251.9 138 90.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.3e-64 249.6 229 53.7
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.5e-60 235.3 138 81.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.8e-56 221.5 221 51.1
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.6e-55 219.5 221 52.0
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.4e-55 219.2 221 51.6
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.7e-55 218.4 222 51.4
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.7e-55 218.4 222 52.7
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.8e-54 216.1 221 51.6
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-54 215.7 222 51.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-53 214.2 221 51.6
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.8e-53 213.4 222 51.4
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 3.1e-53 212.6 217 51.6
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 4.1e-53 212.2 221 51.1
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.6e-52 210.3 223 49.8
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 2.7e-52 209.5 220 49.1
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 7.7e-52 208.0 217 51.6
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.3e-51 207.2 220 48.2
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.7e-51 206.8 227 48.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 8.6e-51 204.5 229 45.4
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 5.5e-50 201.8 217 47.5
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.6e-49 200.3 223 47.5
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.8e-49 199.5 228 46.9
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 8.0e-49 198.0 214 48.6
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.0e-48 197.6 226 46.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.0e-48 197.6 219 46.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.8e-48 196.8 230 45.2
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.3e-48 196.4 238 44.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 3.0e-48 196.1 219 45.2
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 5.2e-48 195.3 220 45.9
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 5.2e-48 195.3 209 46.9
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 2.0e-47 193.4 221 45.7
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.6e-47 193.0 224 46.4
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.4e-47 192.6 209 45.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.4e-47 192.6 225 42.7
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 9.8e-47 191.0 199 51.3
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 9.8e-47 191.0 207 47.3
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 9.8e-47 191.0 227 45.4
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-46 190.7 224 45.5
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.7e-46 190.3 216 46.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 2.8e-46 189.5 207 45.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 3.7e-46 189.1 203 47.3
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.9e-46 188.7 217 46.1
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 8.3e-46 188.0 217 48.4
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 8.3e-46 188.0 222 47.3
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 8.3e-46 188.0 208 47.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.1e-45 187.6 226 45.6
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.8e-45 186.8 221 46.2
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.8e-45 186.8 222 47.7
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.8e-45 186.8 200 48.5
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.4e-45 186.4 229 43.2
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.4e-45 186.4 203 49.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.2e-45 186.0 204 47.5
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.2e-45 186.0 207 48.8
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.1e-45 185.7 196 48.0
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.1e-45 185.7 224 45.5
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 4.1e-45 185.7 208 47.1
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.4e-45 185.3 219 46.1
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.2e-45 184.5 220 44.5
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.2e-45 184.5 226 41.6
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 9.2e-45 184.5 208 46.2
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.6e-44 183.7 208 47.1
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 3.5e-44 182.6 217 44.7
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 3.5e-44 182.6 216 44.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-43 181.0 223 43.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.7e-43 180.3 229 42.4
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.9e-43 179.5 195 48.7
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.9e-43 179.5 225 42.7
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 5.0e-43 178.7 223 43.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.6e-43 178.3 245 39.2
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 6.6e-43 178.3 204 46.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 6.6e-43 178.3 216 44.0
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 8.6e-43 177.9 114 78.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 8.6e-43 177.9 214 44.4
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-42 177.6 233 41.6
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.1e-42 177.6 219 45.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.5e-42 177.2 198 49.0
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.9e-42 176.8 222 43.2
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.5e-42 176.4 209 43.5
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.5e-42 176.4 217 42.4
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 3.3e-42 176.0 195 46.7
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.3e-42 176.0 245 39.2
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 5.6e-42 175.3 209 45.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 5.6e-42 175.3 232 40.9
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 5.6e-42 175.3 229 43.2
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 7.3e-42 174.9 189 50.8
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 7.3e-42 174.9 209 47.4
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.3e-42 174.9 233 41.6
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 9.5e-42 174.5 207 44.0
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.5e-42 174.5 220 42.7
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.2e-41 174.1 220 42.3
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.2e-41 174.1 235 42.1
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.6e-41 173.7 203 43.3
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.6e-41 173.7 217 43.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.1e-41 173.3 199 47.2
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 2.8e-41 172.9 209 47.4
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.8e-41 172.9 202 45.0
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.8e-41 172.9 210 45.7
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.6e-41 172.6 208 46.6
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.6e-41 172.6 209 44.5
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 3.6e-41 172.6 221 43.0
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 6.1e-41 171.8 220 43.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 6.1e-41 171.8 200 45.5
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 6.1e-41 171.8 207 44.0
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.4e-40 170.6 208 42.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-40 170.2 221 42.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.8e-40 170.2 201 45.3
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.3e-40 169.9 225 44.0
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 3.1e-40 169.5 207 42.5
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 6.8e-40 168.3 220 43.6
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.9e-40 167.9 213 42.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 1.2e-39 167.5 219 42.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-39 167.5 196 43.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.2e-39 167.5 219 42.9
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.5e-39 167.2 221 40.7
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 2.0e-39 166.8 210 44.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.4e-39 165.6 215 43.7
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 7.5e-39 164.9 209 45.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.7e-38 163.7 208 44.7
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.2e-38 163.3 209 44.5
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-38 163.3 209 44.5
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.9e-38 162.9 200 43.5
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.7e-38 162.5 212 42.5
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 4.9e-38 162.2 218 44.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 6.4e-38 161.8 209 43.5
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 6.4e-38 161.8 249 37.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.1e-37 161.0 220 41.4
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.4e-37 159.8 214 43.5
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 7.0e-37 158.3 114 71.9
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 9.2e-37 157.9 208 43.8
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.6e-36 157.1 199 39.2
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 4.6e-36 155.6 159 50.3
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 7.8e-36 154.8 233 39.1
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 3.9e-35 152.5 221 38.9
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 5.0e-35 152.1 204 42.6
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 8.6e-35 151.4 170 45.9
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 8.6e-35 151.4 240 39.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.3e-34 149.4 225 39.1
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.3e-34 149.4 266 34.2
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 7.3e-34 148.3 203 40.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 9.5e-34 147.9 135 52.6
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 6.2e-33 145.2 202 41.1
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.8e-32 143.7 221 39.8
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.8e-32 143.7 221 39.8
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.0e-32 142.5 177 43.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 2.4e-29 133.3 217 38.2
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.7e-28 129.8 70 84.3
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 7.8e-28 128.3 169 44.4
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 5.6e-26 122.1 117 50.4
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 2.1e-25 120.2 136 44.9
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.1e-24 117.9 212 36.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.4e-21 106.7 138 41.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.1e-21 105.9 134 44.0
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 4.6e-20 102.4 122 45.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 6.6e-19 98.6 138 41.3
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 7.3e-18 95.1 62 62.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 9.6e-18 94.7 165 36.4
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.1e-16 89.7 94 52.1
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 5.4e-13 79.0 76 51.3
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 6.0e-12 75.5 108 40.7
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.3e-10 69.3 152 30.9
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.8e-08 63.9 56 53.6


User provided reference genes

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