Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 6.6e-67 257.3 136 100.0
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 7.8e-60 233.8 140 90.7
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 9.6e-58 226.9 140 88.6
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 9.6e-58 226.9 140 88.6
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 9.6e-58 226.9 140 88.6
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 3.6e-57 224.9 150 84.7
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 3.6e-57 224.9 150 84.7
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 9.0e-56 220.3 150 82.7
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 9.0e-56 220.3 150 82.7
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.2e-55 219.9 150 81.3
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.4e-55 218.4 148 80.4
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.7e-54 216.1 148 80.4
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 8.4e-54 213.8 144 81.2
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 8.4e-54 213.8 146 82.2
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 8.4e-54 213.8 144 81.2
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 8.4e-54 213.8 149 81.2
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 1.4e-53 213.0 148 79.1
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 2.7e-44 182.2 158 65.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 4.9e-38 161.4 132 65.2
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 6.4e-38 161.0 128 66.4
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 8.4e-38 160.6 121 69.4
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 8.4e-38 160.6 124 67.7
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.9e-37 159.5 121 68.6
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 2.4e-37 159.1 121 68.6
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.2e-37 158.7 121 68.6
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 4.2e-37 158.3 141 61.7
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 4.2e-37 158.3 110 71.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 4.2e-37 158.3 125 65.6
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 5.5e-37 157.9 113 80.5
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 9.3e-37 157.1 123 65.9
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.6e-36 156.4 112 74.1
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 4.6e-36 154.8 90 90.0
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 4.6e-36 154.8 112 73.2
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 6.0e-36 154.5 115 71.3
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 6.0e-36 154.5 121 66.9
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 6.0e-36 154.5 119 67.2
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 6.0e-36 154.5 119 67.2
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 6.0e-36 154.5 119 67.2
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 7.9e-36 154.1 134 64.9
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.0e-35 153.7 131 63.4
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.0e-35 153.7 130 63.8
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.3e-35 153.3 135 61.5
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.8e-35 152.9 132 62.1
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.8e-35 152.9 156 63.5
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.8e-35 152.9 121 66.1
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 1.8e-35 152.9 121 66.9
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 2.3e-35 152.5 118 67.8
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 3.9e-35 151.8 118 66.9
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 6.7e-35 151.0 138 62.3
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 1.5e-34 149.8 120 63.3
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.5e-34 149.1 131 61.8
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.5e-34 149.1 121 64.5
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 4.3e-34 148.3 117 65.8
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 4.3e-34 148.3 135 61.5
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 7.4e-34 147.5 142 56.3
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 7.4e-34 147.5 125 62.4
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 9.6e-34 147.1 142 57.7
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 9.6e-34 147.1 131 60.3
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.3e-33 146.7 132 59.8
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 2.1e-33 146.0 117 64.1
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 2.8e-33 145.6 136 58.8
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.8e-33 145.6 140 57.9
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.8e-33 145.6 140 57.9
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 6.2e-33 144.4 131 60.3
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 8.2e-33 144.1 109 67.0
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.1e-32 143.7 140 57.1
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 1.1e-32 143.7 139 57.6
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.1e-32 143.7 123 63.4
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.4e-32 143.3 93 81.7
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 2.4e-32 142.5 123 63.4
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 3.1e-32 142.1 131 58.0
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 4.0e-32 141.7 137 58.4
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 2.0e-31 139.4 111 62.2
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 2.0e-31 139.4 109 63.3
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 5.8e-31 137.9 119 64.7
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.7e-30 136.3 108 63.9
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 2.2e-30 136.0 101 67.3
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.9e-30 135.6 142 51.4
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 3.8e-30 135.2 106 65.1
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 7.1e-29 131.0 111 61.3
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.2e-28 130.2 126 57.9
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 2.7e-28 129.0 127 55.1
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 4.6e-28 128.3 68 94.1
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.0e-27 127.1 103 67.0
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 1.3e-27 126.7 107 61.7
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.3e-27 126.7 90 70.0
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.8e-27 126.3 109 57.8
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.3e-27 125.9 103 66.0
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.7e-27 124.0 90 71.1
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.1e-26 123.6 99 65.7
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.5e-26 122.5 99 63.6
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 4.3e-26 121.7 77 76.6
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 5.7e-26 121.3 111 56.8
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 5.7e-26 121.3 111 56.8
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 5.7e-26 121.3 105 63.8
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 9.7e-26 120.6 99 61.6
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 9.7e-26 120.6 103 64.1
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 9.7e-26 120.6 94 64.9
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 2.2e-25 119.4 116 56.9
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 8.2e-25 117.5 120 52.5
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 6.9e-24 114.4 119 52.9
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 6.9e-24 114.4 136 47.8
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 9.0e-24 114.0 116 55.2
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.5e-23 113.2 90 58.9
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 8.5e-22 107.5 99 57.6
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.2e-21 105.5 123 48.0
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 4.2e-21 105.1 84 64.3
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.1e-20 102.8 86 57.0
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 3.6e-20 102.1 91 70.3
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 1.5e-18 96.7 76 57.9
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.3e-17 93.6 147 39.5
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 2.2e-17 92.8 97 47.4
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.8e-17 92.4 75 65.3
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 6.3e-17 91.3 68 72.1
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 8.2e-17 90.9 68 72.1
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 8.2e-17 90.9 76 56.6
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 3.1e-16 89.0 79 54.4
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 9.1e-16 87.4 56 78.6
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 5.0e-14 81.6 109 46.8
BcaB04g19162 Brassica carinata HOM05D005411 ORTHO05D006463 5.5e-13 78.2 75 68.0
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 9.4e-13 77.4 65 61.5
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 7.9e-12 74.3 56 71.4
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.0e-11 73.9 67 52.2
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.0e-11 73.9 67 52.2
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 5.1e-11 71.6 66 56.1
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 6.7e-11 71.2 70 67.1
AL8G12210 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 6.7e-11 71.2 70 67.1
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 6.7e-11 71.2 68 58.8
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.6e-10 69.3 77 51.9
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 5.7e-10 68.2 84 48.8
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.7e-09 66.6 43 72.1
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 4.1e-08 62.0 108 39.8
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 3.4e-07 58.9 46 63.0
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 3.4e-07 58.9 46 63.0
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 7.7e-07 57.8 67 52.2
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 7.7e-07 57.8 67 52.2
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 2.9e-06 55.8 67 50.7
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 3.8e-06 55.5 67 50.7


User provided reference genes

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