Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03240 Brassica carinata HOM05D004750 ORTHO05D006207 9.8e-80 300.1 150 100.0
C04p03600 Brassica napus HOM05D004750 ORTHO05D006207 5.4e-54 214.5 137 86.1
BolC4t21995H Brassica oleracea HOM05D004750 ORTHO05D006207 2.7e-53 212.2 143 82.5
A05p02980 Brassica napus HOM05D004750 ORTHO05D006207 1.8e-49 199.5 140 77.9
Thhalv10016471m.g Eutrema salsugineum HOM05D004750 ORTHO05D006207 3.1e-49 198.7 141 76.6
Sp4g24590 Schrenkiella parvula HOM05D004750 ORTHO05D006207 6.9e-49 197.6 141 76.6
BraA05t19288Z Brassica rapa HOM05D004750 ORTHO05D006207 2.2e-47 192.6 147 74.1
CARHR137490 Cardamine hirsuta HOM05D004750 ORTHO05D006207 3.0e-44 182.2 142 70.4
AT2G42450 Arabidopsis thaliana HOM05D004750 ORTHO05D006207 8.1e-42 174.1 143 67.1
Carub.0004s2484 Capsella rubella HOM05D004750 ORTHO05D006207 8.1e-42 174.1 144 66.7
AL4G40900 Arabidopsis lyrata HOM05D004750 ORTHO05D006207 1.1e-41 173.7 143 67.1
Aa31LG1G24270 Aethionema arabicum HOM05D004750 ORTHO05D006207 3.1e-33 145.6 120 68.3
THA.LOC104802241 Tarenaya hassleriana HOM05D004750 ORTHO05D006207 2.0e-32 142.9 146 56.8
Cfa002398 Carpinus fangiana HOM05D004750 ORTHO05D006207 1.1e-19 100.5 142 45.8
QL10p040829 Quercus lobata HOM05D004750 ORTHO05D006207 1.1e-19 100.5 121 47.9
GSVIVG01028293001 Vitis vinifera HOM05D004750 ORTHO05D006207 1.9e-19 99.8 146 43.2
Potri.005G222000 Populus trichocarpa HOM05D004750 ORTHO05D006207 4.3e-19 98.6 133 45.9
Haze_24596 Corylus avellana HOM05D004750 ORTHO05D006207 7.4e-19 97.8 121 47.1
Atru.chr5.1643 Acer truncatum HOM05D004750 ORTHO05D006207 9.7e-19 97.4 112 50.9
Eucgr.B01530 Eucalyptus grandis HOM05D004750 ORTHO05D006207 3.7e-18 95.5 143 44.8
Lsat_1_v5_gn_5_182081 Lactuca sativa HOM05D004750 ORTHO05D006207 8.2e-18 94.4 131 45.0
Hund09589 Selenicereus undatus HOM05D004750 ORTHO05D006207 1.4e-17 93.6 134 38.8
Aqoxy2G03613 Aquilegia oxysepala HOM05D004750 ORTHO05D006207 1.8e-17 93.2 146 43.8
RcHm_v2.0_Chr6g0288821 Rosa chinensis HOM05D004750 ORTHO05D006207 5.3e-17 91.7 142 47.9
Lj1A64T37 Lonicera japonica HOM05D004750 ORTHO05D006207 1.2e-16 90.5 146 41.8
Thecc.01G261600 Theobroma cacao HOM05D004750 ORTHO05D006207 1.5e-16 90.1 145 43.4
Ciclev10019537m.g Citrus clementina HOM05D004750 ORTHO05D006207 2.0e-16 89.7 146 43.2
EL10Ac5g10422 Beta vulgaris HOM05D004750 ORTHO05D006207 3.4e-16 89.0 135 43.7
Actinidia09562 Actinidia chinensis HOM05D004750 ORTHO05D006207 7.6e-16 87.8 145 42.8
Dinv34600 Davidia involucrata HOM05D004750 ORTHO05D006207 7.6e-16 87.8 139 43.9
Ca_09693_v3 Cicer arietinum L. HOM05D004750 ORTHO05D006207 1.3e-15 87.0 120 42.5
Prupe.8G227200 Prunus persica HOM05D004750 ORTHO05D006207 1.3e-15 87.0 140 43.6
TAR362G0996 Trochodendron aralioides HOM05D004750 ORTHO05D006207 1.3e-15 87.0 142 39.4
CSS0022255 Camellia sinensis var. sinensis HOM05D004750 ORTHO05D006207 1.7e-15 86.7 134 38.8
COL.COLO4_05604 Corchorus olitorius HOM05D004750 ORTHO05D006207 2.2e-15 86.3 148 42.6
Medtr1g070195 Medicago truncatula HOM05D004750 ORTHO05D006207 3.8e-15 85.5 120 42.5
Cpa.g.sc50.41 Carica papaya HOM05D004750 ORTHO05D006207 5.0e-15 85.1 89 53.9
Gohir.D08G207700 Gossypium hirsutum HOM05D004750 ORTHO05D006207 5.0e-15 85.1 137 42.3
Gorai.004G220100 Gossypium raimondii HOM05D004750 ORTHO05D006207 5.0e-15 85.1 137 42.3
Lj5g0027127 Lotus japonicus HOM05D004750 ORTHO05D006207 5.0e-15 85.1 124 43.5
Phvul.007G194900 Phaseolus vulgaris HOM05D004750 ORTHO05D006207 6.5e-15 84.7 138 37.0
TWI18G0451 Tripterygium wilfordii HOM05D004750 ORTHO05D006207 8.5e-15 84.3 121 43.8
Glyma.10G035200 Glycine max HOM05D004750 ORTHO05D006207 1.4e-14 83.6 108 42.6
CANSAT01G0335 Cannabis sativa HOM05D004750 ORTHO05D006207 1.9e-14 83.2 139 38.8
Ah.11g049820 Amaranthus hybridus HOM05D004750 ORTHO05D006207 2.5e-14 82.8 135 40.7
ECA248G1706 Erigeron canadensis HOM05D004750 ORTHO05D006207 2.5e-14 82.8 137 39.4
MELO3C012746.2 Cucumis melo HOM05D004750 ORTHO05D006207 3.2e-14 82.4 137 41.6
HanXRQChr01g0014351 Helianthus annuus HOM05D004750 ORTHO05D006207 3.2e-14 82.4 144 39.6
MD05G1200600 Malus domestica HOM05D004750 ORTHO05D006207 3.2e-14 82.4 134 43.3
FAN24G1514 Fragaria x ananassa HOM05D004750 ORTHO05D006207 4.2e-14 82.0 136 45.6
PSO063G5405 Papaver somniferum HOM05D004750 ORTHO05D006207 7.2e-14 81.3 136 37.5
TPR.G3586 Trifolium pratense HOM05D004750 ORTHO05D006207 7.2e-14 81.3 119 44.5
FvH4_2g21920 Fragaria vesca HOM05D004750 ORTHO05D006207 9.3e-14 80.9 136 45.6
Peaxi162Scf00134g00912 Petunia axillaris HOM05D004750 ORTHO05D006207 9.3e-14 80.9 133 39.1
Psat0s484g0120 Pisum sativum HOM05D004750 ORTHO05D006207 9.3e-14 80.9 120 39.2
VMungo0720G0257 Vigna mungo HOM05D004750 ORTHO05D006207 9.3e-14 80.9 97 47.4
Glyma.13G121500 Glycine max HOM05D004750 ORTHO05D006207 1.2e-13 80.5 106 43.4
Gohir.A08G189200 Gossypium hirsutum HOM05D004750 ORTHO05D006207 1.2e-13 80.5 134 45.5
Psat0s4441g0040 Pisum sativum HOM05D004750 ORTHO05D006207 1.6e-13 80.1 112 40.2
PGR031G0841 Punica granatum HOM05D004750 ORTHO05D006207 2.7e-13 79.3 140 38.6
FAN15G0403 Fragaria x ananassa HOM05D004750 ORTHO05D006207 4.6e-13 78.6 139 44.6
FAN20G0807 Fragaria x ananassa HOM05D004750 ORTHO05D006207 4.6e-13 78.6 136 44.1
Nn3g19610 Nelumbo nucifera HOM05D004750 ORTHO05D006207 4.6e-13 78.6 143 37.8
AUR62011896 Chenopodium quinoa HOM05D004750 ORTHO05D006207 1.0e-12 77.4 133 39.1
Nitab4.5_0000086g0140 Nicotiana tabacum HOM05D004750 ORTHO05D006207 1.0e-12 77.4 123 39.8
PGSC0003DMG400020145 Solanum tuberosum HOM05D004750 ORTHO05D006207 1.4e-12 77.0 135 39.3
Cc01_g18500 Coffea canephora HOM05D004750 ORTHO05D006207 1.8e-12 76.6 147 38.8
PSO017G3851 Papaver somniferum HOM05D004750 ORTHO05D006207 1.8e-12 76.6 117 41.0
AUR62024737 Chenopodium quinoa HOM05D004750 ORTHO05D006207 2.3e-12 76.3 133 39.1
Sc17g0000770 Simmondsia chinensis HOM05D004750 ORTHO05D006207 2.3e-12 76.3 78 52.6
Solyc06g083920.4 Solanum lycopersicum HOM05D004750 ORTHO05D006207 2.3e-12 76.3 133 39.8
Sopen06g035320 Solanum pennellii HOM05D004750 ORTHO05D006207 2.3e-12 76.3 133 39.8
CiPaw.03G261600 Carya illinoinensis HOM05D004750 ORTHO05D006207 3.0e-12 75.9 79 57.0
Lalb_Chr06g0162481 Lupinus albus HOM05D004750 ORTHO05D006207 5.1e-12 75.1 135 40.0
CsaV3_7G027010 Cucumis sativus L. HOM05D004750 ORTHO05D006207 6.7e-12 74.7 104 44.2
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 6.7e-12 74.7 104 39.4
Manes.12G030800 Manihot esculenta HOM05D004750 ORTHO05D006207 8.8e-12 74.3 137 36.5
ATR0680G188 Amborella trichopoda HOM05D004750 ORTHO05D006207 1.1e-11 73.9 141 38.3
Duzib133G0290 Durio zibethinus HOM05D004750 ORTHO05D006207 1.1e-11 73.9 144 40.3
CAN.G771.23 Capsicum annuum HOM05D004750 ORTHO05D006207 1.9e-11 73.2 133 39.1
HanXRQChr09g0249261 Helianthus annuus HOM05D004750 ORTHO05D006207 1.9e-11 73.2 138 37.7
Rhsim01G0266000 Rhododendron simsii HOM05D004750 ORTHO05D006207 1.9e-11 73.2 116 42.2
Sabra05G0170600 Salix brachista HOM05D004750 ORTHO05D006207 1.3e-10 70.5 93 46.2
Hma1.2p1_0273F.1_g109920 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 2.2e-10 69.7 58 60.3
ClCG09G008060 Citrullus lanatus HOM05D004750 ORTHO05D006207 6.3e-10 68.2 138 37.7
vmacro14850 Vaccinium macrocarpon HOM05D004750 ORTHO05D006207 8.2e-10 67.8 114 39.5
arahy.Tifrunner.gnm1.ann1.58RJ2S Arachis hypogaea HOM05D004750 ORTHO05D006207 1.1e-09 67.4 126 34.1
arahy.Tifrunner.gnm1.ann1.I9TYEM Arachis hypogaea HOM05D004750 ORTHO05D006207 1.1e-09 67.4 126 34.1
Migut.N02195 Erythranthe guttata HOM05D004750 ORTHO05D006207 1.8e-09 66.6 104 42.3
Hma1.2p1_0273F.1_g109910 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 1.8e-09 66.6 89 46.1
SGA_v2.0_scaffold80G25776 Striga asiatica HOM05D004750 ORTHO05D006207 2.4e-09 66.2 131 39.7
CDE05G0548 Ceratophyllum demersum HOM05D004750 ORTHO05D006207 3.1e-09 65.9 114 33.3
Duzib211G0524 Durio zibethinus HOM05D004750 ORTHO05D006207 3.1e-09 65.9 144 34.0
unitig_37.g12601 Utricularia gibba HOM05D004750 ORTHO05D006207 2.2e-07 59.7 132 31.8
Oeu026229.2 Olea europaea HOM05D004750 ORTHO05D006207 8.5e-07 57.8 154 29.2
DCAR_012532 Daucus carota HOM05D004750 ORTHO05D006207 1.4e-06 57.0 146 37.0
DCAR_002681 Daucus carota HOM05D004750 ORTHO05D006207 1.9e-06 56.6 109 33.9
HPP92_007154 Vanilla planifolia HOM05D004750 ORTHO05D006207 1.9e-06 56.6 63 46.0
Peaxi162Scf01530g00029 Petunia axillaris HOM05D004750 ORTHO05D006207 2.5e-06 56.2 100 33.0


User provided reference genes

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