Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03208 Brassica carinata HOM05D002011 ORTHO05D001948 1.2e-95 353.2 177 100.0
BraA06t26521Z Brassica rapa HOM05D002011 ORTHO05D001948 1.1e-74 283.5 176 84.7
BcaNung02288 Brassica carinata HOM05D002011 ORTHO05D001948 5.6e-74 281.2 174 83.9
BolC7t44794H Brassica oleracea HOM05D002011 ORTHO05D001948 5.6e-74 281.2 174 83.9
C07p42640 Brassica napus HOM05D002011 ORTHO05D001948 1.6e-73 279.6 174 83.3
A06p35950 Brassica napus HOM05D002011 ORTHO05D001948 6.6e-67 257.7 185 75.7
Sp2g22330 Schrenkiella parvula HOM05D002011 ORTHO05D001948 1.4e-61 240.0 185 74.1
Thhalv10004910m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.5e-55 219.9 193 67.9
AL6G36860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 2.9e-46 189.1 184 63.6
CARHR188280 Cardamine hirsuta HOM05D002011 ORTHO05D001948 1.2e-44 183.7 181 60.8
BcaNung04979 Brassica carinata HOM05D002011 ORTHO05D001948 6.9e-40 167.9 85 98.8
Carub.0006s2302 Capsella rubella HOM05D002011 ORTHO05D001948 9.0e-40 167.5 190 58.9
Aa31LG11G4430 Aethionema arabicum HOM05D002011 ORTHO05D001948 7.9e-36 154.5 208 50.0
AT5G25210 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 2.8e-33 146.0 183 52.5
THA.LOC104799044 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 4.6e-28 128.6 241 43.2
THA.LOC104814118 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 2.5e-26 122.9 249 38.6
MELO3C011282.2 Cucumis melo HOM05D002011 ORTHO05D001948 9.6e-18 94.4 235 32.8
Cfa013098 Carpinus fangiana HOM05D002011 ORTHO05D001948 6.2e-17 91.7 244 33.2
BcaNung04980 Brassica carinata HOM05D002011 ORTHO05D001948 1.8e-16 90.1 42 100.0
BcaC09g51992 Brassica carinata HOM05D002011 ORTHO05D001948 1.2e-15 87.4 235 32.3
BolC1t00687H Brassica oleracea HOM05D002011 ORTHO05D001948 1.2e-15 87.4 235 32.3
Lj1g0007627 Lotus japonicus HOM05D002011 ORTHO05D001948 1.2e-15 87.4 253 31.2
BraA01t00593Z Brassica rapa HOM05D002011 ORTHO05D001948 1.5e-15 87.0 232 32.8
A01p06260 Brassica napus HOM05D002011 ORTHO05D001948 2.0e-15 86.7 234 32.1
C01p06900 Brassica napus HOM05D002011 ORTHO05D001948 3.4e-15 85.9 235 31.9
Thhalv10015313m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 3.4e-15 85.9 174 39.7
Cpa.g.sc127.2 Carica papaya HOM05D002011 ORTHO05D001948 7.6e-15 84.7 130 48.5
Psat5g036760 Pisum sativum HOM05D002011 ORTHO05D001948 7.6e-15 84.7 248 30.2
CiPaw.08G008100 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.7e-14 83.6 253 32.0
Thhalv10025671m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 2.2e-14 83.2 241 32.4
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.9e-13 80.1 244 28.7
Manes.16G126300 Manihot esculenta HOM05D002011 ORTHO05D001948 1.9e-13 80.1 258 31.4
BcaC01g01041 Brassica carinata HOM05D002011 ORTHO05D001948 3.2e-13 79.3 236 32.6
CsaV3_2G032320 Cucumis sativus L. HOM05D002011 ORTHO05D001948 4.2e-13 79.0 185 36.2
VMungo1309G3164 Vigna mungo HOM05D002011 ORTHO05D001948 4.2e-13 79.0 148 36.5
AL7G19860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 5.5e-13 78.6 243 32.1
Ca_15760_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 5.5e-13 78.6 157 36.9
MELO3C016985.2 Cucumis melo HOM05D002011 ORTHO05D001948 5.5e-13 78.6 203 34.5
BcaB06g28049 Brassica carinata HOM05D002011 ORTHO05D001948 7.2e-13 78.2 248 29.8
BcaNung03130 Brassica carinata HOM05D002011 ORTHO05D001948 7.2e-13 78.2 246 30.5
BraA04t17554Z Brassica rapa HOM05D002011 ORTHO05D001948 7.2e-13 78.2 241 32.8
BcaC02g08361 Brassica carinata HOM05D002011 ORTHO05D001948 9.3e-13 77.8 245 32.2
A04p19630 Brassica napus HOM05D002011 ORTHO05D001948 9.3e-13 77.8 241 32.8
C04p55210 Brassica napus HOM05D002011 ORTHO05D001948 9.3e-13 77.8 245 32.2
CsaV3_4G036820 Cucumis sativus L. HOM05D002011 ORTHO05D001948 1.2e-12 77.4 206 34.0
BolC3t21060H Brassica oleracea HOM05D002011 ORTHO05D001948 1.6e-12 77.0 232 32.8
BolC4t27060H Brassica oleracea HOM05D002011 ORTHO05D001948 2.1e-12 76.6 245 32.2
CARHR239930 Cardamine hirsuta HOM05D002011 ORTHO05D001948 2.7e-12 76.3 246 29.3
Medtr3g106340 Medicago truncatula HOM05D002011 ORTHO05D001948 3.5e-12 75.9 249 28.9
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 3.5e-12 75.9 195 32.3
PGR044G0932 Punica granatum HOM05D002011 ORTHO05D001948 4.6e-12 75.5 167 37.7
MD15G1131300 Malus domestica HOM05D002011 ORTHO05D001948 7.9e-12 74.7 208 31.7
Carub.0007s0852 Capsella rubella HOM05D002011 ORTHO05D001948 1.0e-11 74.3 251 30.7
ClCG08G013560 Citrullus lanatus HOM05D002011 ORTHO05D001948 1.0e-11 74.3 114 42.1
TWI32G0803 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 1.0e-11 74.3 184 34.2
A08p18360 Brassica napus HOM05D002011 ORTHO05D001948 1.3e-11 73.9 242 30.2
MD08G1154000 Malus domestica HOM05D002011 ORTHO05D001948 1.3e-11 73.9 191 31.9
Manes.03G011400 Manihot esculenta HOM05D002011 ORTHO05D001948 2.3e-11 73.2 196 35.2
QL02p020109 Quercus lobata HOM05D002011 ORTHO05D001948 2.3e-11 73.2 115 40.9
FvH4_2g28270 Fragaria vesca HOM05D002011 ORTHO05D001948 3.0e-11 72.8 144 34.7
Phvul.009G090200 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 3.0e-11 72.8 148 35.8
Sed0015470 Sechium edule HOM05D002011 ORTHO05D001948 3.0e-11 72.8 248 30.2
FAN20G1038 Fragaria x ananassa HOM05D002011 ORTHO05D001948 3.9e-11 72.4 197 33.0
Sed0021865 Sechium edule HOM05D002011 ORTHO05D001948 3.9e-11 72.4 128 36.7
CARHR116290 Cardamine hirsuta HOM05D002011 ORTHO05D001948 5.1e-11 72.0 224 32.1
Actinidia13206 Actinidia chinensis HOM05D002011 ORTHO05D001948 6.7e-11 71.6 237 28.7
FAN15G2620 Fragaria x ananassa HOM05D002011 ORTHO05D001948 6.7e-11 71.6 195 33.3
AT4G32030 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 8.7e-11 71.2 240 29.2
BraA08t33793Z Brassica rapa HOM05D002011 ORTHO05D001948 1.1e-10 70.9 239 29.7
FAN24G0280 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.1e-10 70.9 194 32.0
Ciclev10026302m.g Citrus clementina HOM05D002011 ORTHO05D001948 1.5e-10 70.5 151 35.8
Duzib187G1916 Durio zibethinus HOM05D002011 ORTHO05D001948 1.5e-10 70.5 198 33.8
TWI34G1253 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 1.5e-10 70.5 250 28.4
Atru.chr7.2505 Acer truncatum HOM05D002011 ORTHO05D001948 1.9e-10 70.1 146 37.0
Potri.006G259700 Populus trichocarpa HOM05D002011 ORTHO05D001948 1.9e-10 70.1 252 28.6
Sp7g29830 Schrenkiella parvula HOM05D002011 ORTHO05D001948 1.9e-10 70.1 244 28.3
Actinidia22311 Actinidia chinensis HOM05D002011 ORTHO05D001948 2.5e-10 69.7 237 29.1
THA.LOC104803849 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 3.3e-10 69.3 152 38.8
CANSAT25G2050 Cannabis sativa HOM05D002011 ORTHO05D001948 4.3e-10 68.9 142 36.6
Gohir.A07G030600 Gossypium hirsutum HOM05D002011 ORTHO05D001948 4.3e-10 68.9 99 46.5
RcHm_v2.0_Chr6g0297181 Rosa chinensis HOM05D002011 ORTHO05D001948 4.3e-10 68.9 194 31.4
Sp4g04360 Schrenkiella parvula HOM05D002011 ORTHO05D001948 4.3e-10 68.9 251 31.1
Sed0017330 Sechium edule HOM05D002011 ORTHO05D001948 5.7e-10 68.6 169 34.3
Aa31LG7G400 Aethionema arabicum HOM05D002011 ORTHO05D001948 7.4e-10 68.2 198 31.8
BcaNung06960 Brassica carinata HOM05D002011 ORTHO05D001948 7.4e-10 68.2 97 44.3
C07p59060 Brassica napus HOM05D002011 ORTHO05D001948 7.4e-10 68.2 226 30.1
Hma1.2p1_0228F.1_g096600 Hydrangea macrophylla HOM05D002011 ORTHO05D001948 7.4e-10 68.2 179 33.5
Glyma.04G063900 Glycine max HOM05D002011 ORTHO05D001948 9.7e-10 67.8 251 28.3
Hund29456 Selenicereus undatus HOM05D002011 ORTHO05D001948 9.7e-10 67.8 179 32.4
Hund29458 Selenicereus undatus HOM05D002011 ORTHO05D001948 9.7e-10 67.8 179 32.4
Gorai.001G036200 Gossypium raimondii HOM05D002011 ORTHO05D001948 1.3e-09 67.4 99 45.5
CiPaw.07G227200 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.6e-09 67.0 189 33.3
Gohir.D07G034500 Gossypium hirsutum HOM05D002011 ORTHO05D001948 1.6e-09 67.0 99 45.5
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 2.2e-09 66.6 143 35.7
FAN27G0570 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.2e-09 66.6 112 41.1
Gohir.A05G057100 Gossypium hirsutum HOM05D002011 ORTHO05D001948 2.2e-09 66.6 245 29.4
Medtr2g104770 Medicago truncatula HOM05D002011 ORTHO05D001948 2.2e-09 66.6 181 35.4
Cfa014930 Carpinus fangiana HOM05D020764 ORTHO05D017800 2.8e-09 66.2 98 42.9
Duzib168G0584 Durio zibethinus HOM05D002011 ORTHO05D001948 2.8e-09 66.2 255 29.8
Sp1g14100 Schrenkiella parvula HOM05D002011 ORTHO05D001948 2.8e-09 66.2 199 32.7
Sed0005888 Sechium edule HOM05D002011 ORTHO05D001948 2.8e-09 66.2 194 30.4
unitig_60.g25613 Utricularia gibba HOM05D002011 ORTHO05D001948 3.7e-09 65.9 202 33.2
Sp5g35160 Schrenkiella parvula HOM05D002011 ORTHO05D001948 4.8e-09 65.5 193 30.6
Cfa001910 Carpinus fangiana HOM05D002011 ORTHO05D001948 6.3e-09 65.1 115 41.7
Sabra06G0202900 Salix brachista HOM05D002011 ORTHO05D001948 6.3e-09 65.1 172 32.6
A03p61210 Brassica napus HOM05D002011 ORTHO05D001948 8.2e-09 64.7 231 29.9
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 8.2e-09 64.7 130 37.7
Lalb_Chr23g0268371 Lupinus albus HOM05D002011 ORTHO05D001948 1.1e-08 64.3 245 26.5
BraA03t15165Z Brassica rapa HOM05D002011 ORTHO05D001948 1.4e-08 63.9 230 30.0
CARHR016310 Cardamine hirsuta HOM05D002011 ORTHO05D001948 1.4e-08 63.9 193 30.1
Cfa019323 Carpinus fangiana HOM05D002011 ORTHO05D001948 1.4e-08 63.9 94 42.6
QL05p034085 Quercus lobata HOM05D002011 ORTHO05D001948 1.4e-08 63.9 135 38.5
THA.LOC104803640 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 1.4e-08 63.9 246 29.3
TAR636G1642 Trochodendron aralioides HOM05D002011 ORTHO05D001948 1.4e-08 63.9 172 31.4
Dinv03417 Davidia involucrata HOM05D002011 ORTHO05D001948 1.8e-08 63.5 173 30.1
arahy.Tifrunner.gnm1.ann1.H5ECBD Arachis hypogaea HOM05D002011 ORTHO05D001948 2.4e-08 63.2 124 41.1
arahy.Tifrunner.gnm1.ann1.W5XW0C Arachis hypogaea HOM05D002011 ORTHO05D001948 2.4e-08 63.2 124 41.1
Glyma.15G004800 Glycine max HOM05D002011 ORTHO05D001948 2.4e-08 63.2 155 34.2
Glyma.06G065100 Glycine max HOM05D002011 ORTHO05D001948 3.1e-08 62.8 251 27.1
Dinv18151 Davidia involucrata HOM05D002011 ORTHO05D001948 4.1e-08 62.4 109 41.3
Psat7g258520 Pisum sativum HOM05D002011 ORTHO05D001948 4.1e-08 62.4 157 33.8
arahy.Tifrunner.gnm1.ann1.KT90FJ Arachis hypogaea HOM05D002011 ORTHO05D001948 5.3e-08 62.0 128 35.2
Carub.0002s2694 Capsella rubella HOM05D002011 ORTHO05D001948 5.3e-08 62.0 192 30.2
BcaC07g41480 Brassica carinata HOM05D002011 ORTHO05D001948 6.9e-08 61.6 188 29.3
A07p45090 Brassica napus HOM05D002011 ORTHO05D001948 6.9e-08 61.6 185 28.6
C08p44770 Brassica napus HOM05D002011 ORTHO05D001948 6.9e-08 61.6 188 30.3
CSS0040463 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 6.9e-08 61.6 71 46.5
THA.LOC104818603 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 6.9e-08 61.6 188 33.5
BraA07t32012Z Brassica rapa HOM05D002011 ORTHO05D001948 9.0e-08 61.2 189 29.6
CANSAT56G3958 Cannabis sativa HOM05D002011 ORTHO05D001948 9.0e-08 61.2 159 34.0
Dinv23313 Davidia involucrata HOM05D002011 ORTHO05D001948 9.0e-08 61.2 175 32.6
Glyma.13G369000 Glycine max HOM05D002011 ORTHO05D001948 9.0e-08 61.2 95 43.2
Phvul.005G181100 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 9.0e-08 61.2 162 34.0
TAR625G1096 Trochodendron aralioides HOM05D002011 ORTHO05D001948 9.0e-08 61.2 84 45.2
C06p53920 Brassica napus HOM05D002011 ORTHO05D001948 1.2e-07 60.8 186 28.0
VMungo1080G1625 Vigna mungo HOM05D002011 ORTHO05D001948 1.2e-07 60.8 165 33.9
AL2G40840 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 1.5e-07 60.5 200 28.5
BolC7t46354H Brassica oleracea HOM05D002011 ORTHO05D001948 1.5e-07 60.5 226 28.3
Eucgr.C02724 Eucalyptus grandis HOM05D002011 ORTHO05D001948 1.5e-07 60.5 151 34.4
Nn2g12257 Nelumbo nucifera HOM05D002011 ORTHO05D001948 1.5e-07 60.5 114 42.1
Rhsim02G0206600 Rhododendron simsii HOM05D002011 ORTHO05D001948 1.5e-07 60.5 181 29.3
arahy.Tifrunner.gnm1.ann1.97EW8A Arachis hypogaea HOM05D002011 ORTHO05D001948 2.0e-07 60.1 128 35.9
BolC6t40406H Brassica oleracea HOM05D002011 ORTHO05D001948 2.0e-07 60.1 186 28.0
Cpa.g.sc10.124 Carica papaya HOM05D002011 ORTHO05D001948 2.0e-07 60.1 127 35.4
Psat5g304320 Pisum sativum HOM05D002011 ORTHO05D001948 2.6e-07 59.7 192 29.7
AT1G80610 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 3.4e-07 59.3 200 26.5
BcaB03g14520 Brassica carinata HOM05D002011 ORTHO05D001948 3.4e-07 59.3 198 29.8
A06p11870 Brassica napus HOM05D002011 ORTHO05D001948 3.4e-07 59.3 199 31.2
Eucgr.C01684 Eucalyptus grandis HOM05D002011 ORTHO05D001948 3.4e-07 59.3 222 28.4
BcaB03g12730 Brassica carinata HOM05D002011 ORTHO05D001948 4.5e-07 58.9 187 31.6
Carub.0001s1559 Capsella rubella HOM05D002011 ORTHO05D001948 4.5e-07 58.9 193 32.1
TAR383G0822 Trochodendron aralioides HOM05D002011 ORTHO05D001948 4.5e-07 58.9 183 31.1
Lalb_Chr22g0361441 Lupinus albus HOM05D002011 ORTHO05D001948 5.9e-07 58.5 184 27.2
vmacro11223 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 5.9e-07 58.5 93 37.6
Ciclev10009242m.g Citrus clementina HOM05D002011 ORTHO05D001948 1.0e-06 57.8 189 34.4
THA.LOC104813579 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 1.0e-06 57.8 98 38.8
TAR626G1639 Trochodendron aralioides HOM05D002011 ORTHO05D001948 1.0e-06 57.8 153 36.6
Actinidia25442 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.3e-06 57.4 147 35.4
BraA06t24357Z Brassica rapa HOM05D002011 ORTHO05D001948 1.3e-06 57.4 203 31.0
Lalb_Chr08g0244281 Lupinus albus HOM05D002011 ORTHO05D001948 1.3e-06 57.4 148 31.8
Thecc.09G019200 Theobroma cacao HOM05D002011 ORTHO05D001948 1.3e-06 57.4 77 45.5
unitig_0.g358 Utricularia gibba HOM05D002011 ORTHO05D001948 1.3e-06 57.4 160 33.8
arahy.Tifrunner.gnm1.ann1.KH3NQE Arachis hypogaea HOM05D002011 ORTHO05D001948 1.7e-06 57.0 232 28.0
Thhalv10000568m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.7e-06 57.0 126 37.3
Thhalv10008783m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.7e-06 57.0 194 33.0
Atru.chr10.2381 Acer truncatum HOM05D002011 ORTHO05D001948 2.2e-06 56.6 170 32.4
BcaB02g07260 Brassica carinata HOM05D002011 ORTHO05D001948 2.2e-06 56.6 197 31.0
ClCG05G016560 Citrullus lanatus HOM05D002011 ORTHO05D001948 2.2e-06 56.6 127 36.2
MBI14_g15651_MAGBIO Magnolia biondii HOM05D002011 ORTHO05D001948 2.2e-06 56.6 231 27.3
Nn8g39727 Nelumbo nucifera HOM05D002011 ORTHO05D001948 2.2e-06 56.6 183 33.3
unitig_62.g23779 Utricularia gibba HOM05D002011 ORTHO05D001948 2.2e-06 56.6 158 31.6
C02p37050 Brassica napus HOM05D002011 ORTHO05D001948 2.9e-06 56.2 186 30.6
Cc08_g00170 Coffea canephora HOM05D002011 ORTHO05D001948 2.9e-06 56.2 90 43.3
Sc23g0006520 Simmondsia chinensis HOM05D002011 ORTHO05D001948 2.9e-06 56.2 188 32.4
DCAR_003008 Daucus carota HOM05D002011 ORTHO05D001948 3.8e-06 55.8 152 33.6
Hund03478 Selenicereus undatus HOM05D002011 ORTHO05D001948 3.8e-06 55.8 161 32.9
BcaC03g15943 Brassica carinata HOM05D002011 ORTHO05D001948 5.0e-06 55.5 186 30.6
BolC2t09720H Brassica oleracea HOM05D002011 ORTHO05D001948 5.0e-06 55.5 186 30.6
CSS0010574 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 6.5e-06 55.1 105 41.0
SalBow7G0591 Salvia bowleyana HOM05D002011 ORTHO05D001948 6.5e-06 55.1 148 36.5
GSVIVG01035917001 Vitis vinifera HOM05D002011 ORTHO05D001948 6.5e-06 55.1 139 36.0
Aqoxy7G03522 Aquilegia oxysepala HOM05D002011 ORTHO05D001948 8.5e-06 54.7 184 29.3
C05p14050 Brassica napus HOM05D002011 ORTHO05D001948 8.5e-06 54.7 200 28.5
BolC5t30136H Brassica oleracea HOM05D002011 ORTHO05D001948 8.5e-06 54.7 200 28.5


User provided reference genes

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