Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 9.2e-111 403.7 219 100.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.2e-102 376.7 222 94.1
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 2.1e-102 375.9 220 93.6
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 2.1e-102 375.9 220 93.6
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 9.5e-100 367.1 245 86.1
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.1e-98 363.6 245 85.3
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 4.9e-96 354.8 218 90.8
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.3e-93 345.9 219 85.4
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.3e-85 319.3 221 81.4
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.3e-85 319.3 221 81.4
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.3e-85 319.3 216 80.6
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 9.6e-84 313.9 221 76.9
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.6e-83 313.2 216 76.9
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 2.8e-83 312.4 216 81.0
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 3.1e-82 308.9 216 80.1
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 6.9e-82 307.8 220 79.1
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 9.0e-82 307.4 220 76.8
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.3e-77 292.7 221 73.3
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 2.0e-73 279.6 206 70.4
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 4.8e-67 258.5 205 67.8
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 3.9e-61 238.8 206 70.4
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.5e-57 226.9 212 55.7
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.7e-56 223.4 213 59.2
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 8.5e-56 221.1 216 56.9
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.1e-55 220.7 213 58.2
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.9e-55 219.9 212 56.1
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 4.2e-55 218.8 213 58.7
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.0e-53 214.2 211 57.3
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.8e-53 213.4 191 60.2
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.3e-53 213.0 217 56.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.9e-53 212.2 201 53.7
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.9e-53 212.2 218 52.8
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 6.7e-53 211.5 200 58.0
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 6.7e-53 211.5 217 54.8
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 1.1e-52 210.7 212 54.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-52 210.7 207 52.7
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.1e-52 210.7 202 53.0
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.5e-52 210.3 214 55.6
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.9e-52 209.9 216 55.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.9e-52 209.9 216 55.1
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.9e-52 209.9 211 55.9
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.9e-52 209.9 218 52.3
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 5.7e-52 208.4 183 62.3
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 9.7e-52 207.6 217 54.4
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.3e-51 207.2 210 55.2
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.6e-51 206.8 212 54.2
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.6e-51 206.8 204 53.4
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.6e-51 206.8 199 51.8
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 4.8e-51 205.3 207 54.6
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 4.8e-51 205.3 207 53.6
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.8e-51 205.3 212 53.3
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.1e-50 204.1 202 55.0
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.4e-50 203.8 209 55.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 3.1e-50 202.6 205 53.2
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.3e-50 201.8 209 54.5
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 9.1e-50 201.1 185 58.9
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 9.1e-50 201.1 208 51.0
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.0e-49 199.9 206 52.4
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.6e-49 199.5 205 53.2
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 3.4e-49 199.1 212 51.9
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 3.4e-49 199.1 200 54.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 4.5e-49 198.7 192 55.2
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 5.9e-49 198.4 204 54.9
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 5.9e-49 198.4 196 52.0
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 2.9e-48 196.1 200 53.5
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 3.8e-48 195.7 200 55.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.5e-48 194.5 199 51.8
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.4e-47 193.7 209 53.6
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.9e-47 193.4 208 51.4
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.5e-47 193.0 190 54.2
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.5e-47 193.0 178 53.9
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 3.2e-47 192.6 217 50.2
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 3.2e-47 192.6 202 51.0
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.5e-47 191.8 197 52.8
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 9.4e-47 191.0 224 52.2
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 9.4e-47 191.0 212 51.4
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 1.6e-46 190.3 196 53.6
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.6e-46 190.3 203 51.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.1e-46 189.9 213 49.8
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.1e-46 189.9 208 51.4
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.6e-46 188.7 219 51.6
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.1e-46 188.3 204 52.9
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.0e-45 187.6 196 52.0
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.4e-45 187.2 196 52.6
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.9e-45 185.7 214 51.9
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 5.1e-45 185.3 196 51.0
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.1e-44 184.1 200 49.0
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.6e-44 183.0 212 50.0
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.6e-44 183.0 214 50.5
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 7.4e-44 181.4 220 51.8
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 7.4e-44 181.4 209 50.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 9.7e-44 181.0 204 49.0
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.3e-43 180.6 165 55.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.2e-43 179.9 209 45.9
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.1e-42 177.6 207 50.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 5.3e-42 175.3 210 47.1
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.5e-41 173.7 202 45.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.6e-41 172.9 203 47.8
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 3.4e-41 172.6 214 47.2
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 3.4e-41 172.6 215 47.9
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 4.5e-41 172.2 200 49.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-39 167.5 206 46.1
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 5.5e-39 165.2 198 48.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 9.4e-39 164.5 198 48.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 2.7e-38 162.9 198 48.0
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 4.7e-38 162.2 197 47.2
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 6.7e-37 158.3 202 43.6
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 8.8e-37 157.9 146 52.7
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.8e-34 150.2 137 56.9
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.8e-34 150.2 207 42.0
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 5.3e-34 148.7 206 42.7
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.6e-33 147.1 190 46.3
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 3.5e-33 146.0 201 41.8
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 3.0e-29 132.9 223 38.1
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.5e-28 130.6 122 56.6
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 5.7e-28 128.6 195 43.6
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 8.2e-27 124.8 207 41.5
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.1e-26 122.5 119 56.3
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.0e-24 117.9 196 37.2
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 5.0e-24 115.5 199 38.2
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 5.0e-24 115.5 199 38.2
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 8.5e-24 114.8 199 37.7
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 5.5e-23 112.1 199 37.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.1e-22 110.2 85 61.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.7e-22 109.8 198 36.4
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.8e-21 107.1 198 34.3
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 1.3e-19 100.9 175 35.4
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.7e-19 100.5 180 32.2
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.8e-19 99.8 198 33.3
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 2.2e-16 90.1 177 32.8
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.8e-16 89.4 182 32.4
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.1e-15 87.8 190 34.2
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 7.2e-15 85.1 192 29.7
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.0e-13 79.7 171 32.2
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.4e-10 70.9 142 30.3
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 1.6e-09 67.4 139 34.5
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.7e-08 63.9 86 40.7
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 5.0e-08 62.4 95 31.6
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.5e-07 60.8 114 32.5
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 6.1e-06 55.5 58 48.3
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 8.0e-06 55.1 72 47.2
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 8.0e-06 55.1 75 49.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 8.0e-06 55.1 50 44.0


User provided reference genes

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