Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.7e-244 848.2 426 100.0
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.0e-195 684.9 402 88.1
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 4.4e-194 681.4 397 88.4
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 9.3e-192 673.7 399 86.7
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.0e-190 670.2 411 85.4
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 6.6e-190 667.5 413 84.5
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 8.1e-188 660.6 407 85.3
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 3.8e-185 651.7 412 83.3
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 7.1e-184 647.5 410 82.7
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 7.9e-183 644.0 411 83.9
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.8e-182 642.9 415 81.4
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 8.7e-182 640.6 407 82.6
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.9e-181 639.4 411 82.2
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 7.4e-181 637.5 430 79.1
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 9.6e-181 637.1 426 79.6
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.7e-180 635.2 411 81.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 6.2e-180 634.4 379 87.1
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.0e-162 576.2 412 75.5
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.3e-156 557.0 408 71.8
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.9e-145 519.2 392 68.9
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 3.0e-142 509.2 396 67.2
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 9.7e-141 504.2 400 64.8
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.3e-140 503.8 414 65.0
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 2.2e-140 503.1 402 65.7
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 7.0e-139 498.0 408 63.7
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 9.1e-139 497.7 356 68.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 1.6e-138 496.9 396 65.7
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 2.0e-138 496.5 402 66.2
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.5e-138 495.4 398 64.1
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.0e-137 494.2 392 66.6
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 1.3e-137 493.8 307 76.2
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.2e-137 493.0 404 64.4
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 2.2e-137 493.0 401 64.1
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.9e-137 492.7 399 65.4
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 3.8e-137 492.3 395 64.6
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 3.8e-137 492.3 396 64.6
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 8.5e-137 491.1 399 63.4
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.5e-137 491.1 405 63.0
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 8.5e-137 491.1 315 74.3
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 8.5e-137 491.1 399 63.7
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.1e-136 490.7 407 64.6
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.1e-136 490.7 307 77.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 1.9e-136 490.0 401 63.8
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.4e-136 487.6 315 73.7
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 9.4e-136 487.6 407 62.9
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 9.4e-136 487.6 291 79.4
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 9.4e-136 487.6 397 63.5
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 1.6e-135 486.9 383 65.8
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.7e-135 486.1 400 64.5
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 4.7e-135 485.3 308 75.6
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 6.1e-135 485.0 297 77.8
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-134 483.8 397 63.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.4e-134 483.8 391 65.2
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 4.0e-134 482.3 325 71.7
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 5.2e-134 481.9 296 78.4
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 6.7e-134 481.5 395 64.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 8.8e-134 481.1 322 72.0
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.5e-133 480.3 403 63.3
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 4.4e-133 478.8 325 71.1
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 5.7e-133 478.4 291 78.0
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.5e-133 478.0 403 62.8
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.7e-132 476.9 290 77.6
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.8e-132 476.1 320 73.1
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 6.3e-132 474.9 403 62.5
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 8.2e-132 474.6 405 63.2
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 1.4e-131 473.8 291 78.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.4e-131 473.0 384 64.6
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.1e-131 472.2 291 75.6
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.6e-130 470.3 357 66.1
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 2.1e-127 459.9 368 63.6
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 3.6e-127 459.1 382 64.4
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.2e-126 455.3 285 77.5
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 6.8e-126 454.9 383 62.7
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 8.8e-126 454.5 291 77.0
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.2e-125 454.1 320 69.4
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 3.7e-124 449.1 314 68.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.8e-124 448.7 276 77.9
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 7.0e-123 444.9 276 77.5
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 9.1e-123 444.5 295 71.2
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.0e-122 443.4 295 73.6
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.7e-121 440.3 325 68.0
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 4.2e-120 435.6 281 73.0
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 6.1e-119 431.8 308 65.6
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 6.1e-119 431.8 291 70.4
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.2e-117 427.6 294 68.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 2.0e-117 426.8 256 80.9
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.4e-117 426.0 407 56.5
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.4e-117 425.6 295 68.1
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 5.7e-117 425.2 359 63.0
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 3.7e-116 422.5 260 83.8
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 1.1e-115 421.0 302 66.6
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.1e-115 421.0 398 55.5
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 5.9e-114 415.2 296 76.0
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.3e-113 413.3 355 60.6
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.6e-112 408.7 352 62.8
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.6e-112 408.7 352 62.8
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.6e-112 408.7 352 62.8
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.0e-110 404.4 291 63.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 3.1e-110 402.9 386 55.4
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.5e-109 400.6 394 54.3
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 4.4e-109 399.1 324 64.2
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 2.4e-107 393.3 241 78.0
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 7.0e-107 391.7 291 63.9
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 6.0e-106 388.7 304 66.4
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.7e-105 387.1 380 57.1
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 3.0e-105 386.3 241 76.8
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.9e-105 386.0 300 61.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 8.6e-105 384.8 236 79.2
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.1e-104 384.4 298 61.7
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.3e-104 382.5 414 53.9
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 7.3e-104 381.7 258 74.0
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.6e-103 379.4 300 60.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 3.4e-101 372.9 330 60.9
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.4e-100 368.6 408 52.0
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.3e-100 368.2 298 60.7
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.4e-99 366.7 405 52.8
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.8e-94 350.5 196 83.7
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 5.2e-94 349.0 291 59.8
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 8.9e-94 348.2 257 65.8
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 4.4e-93 345.9 427 48.7
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 2.2e-92 343.6 282 61.3
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-91 341.3 212 77.8
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.8e-90 335.1 384 49.5
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.7e-89 334.0 359 56.8
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-88 331.3 211 76.3
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 2.5e-88 330.1 266 59.4
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 4.3e-88 329.3 301 57.1
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 5.8e-85 318.9 371 50.4
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 5.1e-81 305.8 217 70.0
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.2e-76 290.4 187 78.6
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 2.1e-74 283.9 354 48.6
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.8e-74 282.0 200 65.5
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 4.3e-72 276.2 210 65.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 5.3e-70 269.2 158 78.5
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.7e-68 264.2 291 51.2
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 6.4e-68 262.3 347 45.5
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.2e-67 259.6 269 54.6
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 9.3e-67 258.5 169 72.8
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 7.9e-66 255.4 280 50.4
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.0e-65 255.0 240 57.5
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-65 254.6 160 78.1
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.2e-61 241.5 154 71.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.9e-59 234.2 282 42.6
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 2.1e-58 230.7 170 63.5
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.0e-58 229.2 154 69.5
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.8e-57 227.6 237 59.5
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 8.2e-55 218.8 238 53.8
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 1.8e-54 217.6 137 77.4
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.0e-52 211.8 239 47.7
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.1e-51 208.4 147 70.1
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.2e-51 206.8 148 67.6
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 9.3e-51 205.3 258 48.8
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.1e-50 202.6 151 62.9
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 5.7e-48 196.1 133 69.2
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.8e-47 193.7 274 44.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 2.5e-43 180.6 136 61.0
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 2.7e-42 177.2 175 51.4
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.0e-40 171.0 149 55.0
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 4.5e-37 159.8 119 64.7
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 5.9e-37 159.5 182 52.7
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.3e-36 158.3 195 49.2
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 5.5e-35 152.9 147 59.9
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-30 138.7 199 42.7
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 3.0e-25 120.6 140 45.0
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.8e-23 113.2 81 66.7
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.8e-22 111.3 70 80.0
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 7.0e-22 109.4 102 53.9
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.6e-21 108.2 72 72.2
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 5.9e-21 106.3 112 55.4
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 8.0e-18 95.9 146 44.5
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.7e-15 87.0 170 36.5
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 3.7e-15 87.0 157 39.5
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.0e-14 82.8 142 39.4
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 1.2e-13 82.0 52 80.8
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 2.0e-13 81.3 56 69.6
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 3.5e-13 80.5 51 68.6
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.3e-12 78.6 154 39.6
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.7e-12 78.2 147 40.8
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 5.0e-12 76.6 158 34.2
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.5e-11 73.2 51 60.8
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 6.8e-09 66.2 43 81.4
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 6.3e-07 59.7 45 60.0


User provided reference genes

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