Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 7.5e-108 394.0 224 100.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 2.6e-92 342.4 286 76.9
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 6.6e-88 327.8 266 74.4
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 4.3e-87 325.1 265 74.0
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 2.0e-81 306.2 295 69.2
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 7.3e-79 297.7 269 68.8
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.9e-71 273.1 238 65.1
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 5.6e-71 271.6 295 62.0
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-69 266.2 289 64.4
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 3.1e-69 265.8 298 57.4
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 4.0e-69 265.4 293 60.4
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.2e-68 263.8 260 65.0
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 2.0e-68 263.1 260 64.6
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 7.5e-68 261.2 293 60.4
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 7.5e-68 261.2 241 61.4
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 2.2e-67 259.6 267 59.2
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.4e-66 256.9 291 60.5
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 6.0e-65 251.5 227 62.1
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.5e-63 246.9 280 57.9
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 9.9e-60 234.2 138 87.0
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 3.4e-52 209.1 158 70.3
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.9e-47 193.4 232 50.9
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 6.9e-45 184.9 266 45.5
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 5.8e-44 181.8 259 44.8
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 9.9e-44 181.0 199 50.8
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 2.2e-43 179.9 270 43.3
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 3.8e-43 179.1 257 45.5
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 3.8e-43 179.1 224 49.6
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 4.9e-43 178.7 219 48.9
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 8.4e-43 177.9 258 44.2
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 8.4e-43 177.9 279 42.7
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 1.4e-42 177.2 261 45.6
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.9e-42 176.8 232 47.8
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.2e-42 176.0 220 46.8
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 5.4e-42 175.3 274 45.6
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 7.1e-42 174.9 271 43.2
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 1.6e-41 173.7 177 53.7
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.6e-41 173.7 256 44.5
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.6e-41 173.7 275 41.5
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 2.7e-41 172.9 256 48.4
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 2.7e-41 172.9 273 42.5
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.6e-41 172.2 280 42.1
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 7.9e-41 171.4 204 47.1
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.3e-40 170.6 262 44.7
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.7e-40 170.2 254 48.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 1.7e-40 170.2 256 43.0
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 2.3e-40 169.9 245 44.5
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 3.0e-40 169.5 190 48.9
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.0e-40 169.5 274 41.2
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 3.9e-40 169.1 267 43.1
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 5.1e-40 168.7 247 42.9
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 5.1e-40 168.7 257 47.1
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.5e-39 167.2 113 69.9
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.9e-39 166.8 247 42.9
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 3.3e-39 166.0 275 41.5
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 5.6e-39 165.2 254 42.1
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.6e-39 164.5 246 42.7
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.3e-38 164.1 268 42.2
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.6e-38 163.7 248 47.2
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.6e-38 163.7 261 42.1
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.8e-38 162.9 258 40.7
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 4.8e-38 162.2 118 66.9
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 4.8e-38 162.2 196 48.5
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.1e-37 161.0 261 42.5
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.4e-37 160.6 262 42.7
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.4e-37 160.6 266 42.9
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.8e-37 160.2 224 44.2
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 2.4e-37 159.8 130 60.8
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 3.1e-37 159.5 271 40.6
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.1e-37 159.5 252 41.7
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 5.3e-37 158.7 249 39.8
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 6.9e-37 158.3 252 40.9
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 6.9e-37 158.3 260 40.8
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 6.9e-37 158.3 257 42.0
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 9.0e-37 157.9 167 53.9
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 9.0e-37 157.9 212 47.6
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.2e-36 157.5 295 38.3
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.5e-36 157.1 175 50.3
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 2.6e-36 156.4 205 46.8
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 3.4e-36 156.0 210 46.2
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 3.4e-36 156.0 272 40.4
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 3.4e-36 156.0 252 43.3
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 4.5e-36 155.6 201 44.8
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 5.8e-36 155.2 254 40.9
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 7.6e-36 154.8 250 42.0
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 9.9e-36 154.5 250 41.6
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 9.9e-36 154.5 250 42.0
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.3e-35 154.1 287 40.8
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 1.3e-35 154.1 253 40.7
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.3e-35 154.1 250 42.0
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.7e-35 153.7 254 41.7
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 1.7e-35 153.7 293 38.6
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.9e-35 152.9 270 40.7
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 3.8e-35 152.5 260 40.0
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 6.4e-35 151.8 256 40.2
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.4e-34 150.6 215 44.2
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.4e-34 150.6 207 41.1
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 2.4e-34 149.8 207 46.4
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 3.2e-34 149.4 227 44.5
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.5e-34 148.7 282 37.6
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 7.1e-34 148.3 250 40.8
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 9.3e-34 147.9 210 44.8
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.2e-33 147.5 202 46.0
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.6e-33 147.1 117 59.8
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.1e-33 146.7 262 39.7
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.7e-33 146.4 192 44.8
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 4.6e-33 145.6 202 45.5
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 6.0e-33 145.2 101 66.3
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.0e-32 144.4 207 44.9
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.0e-32 144.4 204 45.1
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.0e-32 142.9 225 41.8
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 3.0e-32 142.9 187 49.2
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.9e-32 142.5 212 45.3
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 3.9e-32 142.5 101 63.4
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 6.7e-32 141.7 211 45.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.1e-31 141.0 115 60.0
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.7e-30 136.0 220 44.1
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 4.8e-30 135.6 248 37.1
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 6.2e-30 135.2 214 43.9
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.1e-29 134.4 114 55.3
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 1.1e-29 134.4 181 42.0
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 2.4e-29 133.3 118 53.4
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 3.4e-28 129.4 112 52.7
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 4.5e-28 129.0 201 39.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.0e-27 127.9 118 50.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.0e-27 127.9 118 50.8
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.0e-27 127.9 213 41.3
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 2.9e-27 126.3 230 38.3
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-26 124.4 152 48.0
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-26 123.6 89 60.7
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 2.5e-26 123.2 138 50.0
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-25 120.6 147 44.9
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 2.1e-25 120.2 90 57.8
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 2.7e-25 119.8 217 41.0
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 3.5e-25 119.4 145 45.5
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.5e-25 119.4 235 37.0
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 1.0e-24 117.9 95 54.7
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 8.7e-24 114.8 85 60.0
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.1e-23 114.4 119 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.3e-22 108.6 196 33.7
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 6.3e-22 108.6 167 39.5
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 6.9e-21 105.1 85 56.5
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 2.6e-20 103.2 118 44.1
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.0e-19 101.3 153 41.2
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 2.2e-19 100.1 131 45.0
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.6e-17 92.8 79 60.8
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.0e-16 89.7 250 33.6
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 1.8e-13 80.5 174 36.8
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 4.5e-12 75.9 116 41.4
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 3.2e-10 69.7 130 38.5
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 9.4e-10 68.2 183 33.9
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.7e-09 66.6 114 38.6
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 4.6e-09 65.9 184 33.2


User provided reference genes

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