Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 6.9e-108 394.0 206 100.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 4.6e-104 381.3 206 96.1
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.9e-102 375.9 206 94.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.6e-101 372.9 210 93.8
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.3e-97 357.1 207 91.3
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 6.7e-95 350.9 207 88.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.3e-94 348.6 206 86.4
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.4e-94 347.4 209 87.6
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.8e-92 342.8 206 84.5
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 3.4e-91 338.6 174 98.9
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-89 332.4 204 81.9
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.4e-89 332.4 204 81.4
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.2e-89 332.0 204 81.4
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.2e-89 332.0 204 80.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.6e-88 329.7 204 80.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.3e-87 326.6 202 80.2
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.3e-87 326.6 204 79.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.1e-87 324.7 204 79.9
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.5e-86 323.2 210 78.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.3e-86 322.0 210 77.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 8.2e-85 317.4 204 77.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.8e-84 316.2 207 78.3
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.1e-84 315.5 205 80.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.0e-82 310.5 174 90.2
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.9e-74 282.3 205 71.2
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.7e-71 271.2 206 66.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 6.7e-71 271.2 206 65.5
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.1e-70 270.4 202 69.3
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.5e-70 270.0 207 67.1
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.5e-70 270.0 207 66.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.3e-70 268.5 206 66.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 5.7e-70 268.1 205 68.3
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 5.7e-70 268.1 202 66.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 7.4e-70 267.7 202 68.3
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 7.4e-70 267.7 207 67.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 9.7e-70 267.3 200 68.5
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.6e-69 266.5 206 67.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.8e-69 265.8 202 68.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 3.7e-69 265.4 193 70.5
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.8e-69 265.0 202 68.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 8.2e-69 264.2 201 66.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 8.2e-69 264.2 195 68.7
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.8e-68 263.1 206 66.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.4e-68 262.7 207 65.7
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.4e-68 262.7 204 67.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 3.1e-68 262.3 200 66.5
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 5.3e-68 261.5 204 66.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.9e-68 261.2 207 64.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.2e-67 260.4 207 64.3
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.2e-67 260.4 209 63.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.0e-67 259.6 203 64.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.6e-67 259.2 183 68.9
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.4e-67 258.8 198 65.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.4e-67 258.8 207 63.8
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.4e-67 258.8 204 64.7
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.5e-67 258.5 200 66.5
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 7.7e-67 257.7 208 64.9
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 7.7e-67 257.7 208 64.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.3e-66 256.9 178 71.3
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-66 256.9 205 66.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.3e-66 256.9 195 66.2
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.7e-66 256.5 200 65.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-66 256.1 205 66.8
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.2e-66 256.1 205 66.8
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.9e-66 255.8 208 63.9
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.9e-66 255.8 188 67.6
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 5.0e-66 255.0 195 66.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 5.0e-66 255.0 206 63.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.5e-66 254.6 186 68.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 6.5e-66 254.6 210 62.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 8.5e-66 254.2 206 63.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.1e-65 253.8 182 69.8
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 2.5e-65 252.7 200 65.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 4.2e-65 251.9 209 62.7
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.2e-64 250.4 203 63.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.1e-64 249.6 187 67.9
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.1e-64 249.6 180 66.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.1e-64 249.6 203 64.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-64 249.6 223 61.4
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.1e-64 249.6 198 63.6
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.6e-64 248.8 204 64.7
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.6e-64 248.8 207 63.8
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 4.6e-64 248.4 221 61.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 7.9e-64 247.7 174 69.5
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.8e-63 246.5 198 60.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 3.0e-63 245.7 202 63.4
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 6.7e-63 244.6 189 67.7
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.5e-62 243.4 199 63.3
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.6e-62 242.7 206 64.1
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.4e-62 241.9 196 63.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.4e-62 241.9 196 63.8
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.7e-62 241.5 198 63.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 5.7e-62 241.5 206 61.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.2e-61 239.6 194 64.4
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.8e-61 239.2 198 61.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.7e-61 238.8 206 62.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 3.7e-61 238.8 154 73.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.7e-61 238.8 209 60.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 8.2e-61 237.7 194 59.8
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.1e-60 237.3 188 66.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.4e-60 236.1 194 62.4
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 2.4e-60 236.1 196 62.8
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.4e-60 236.1 191 62.8
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 3.1e-60 235.7 206 61.2
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.1e-60 235.3 149 75.2
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.1e-60 235.3 206 61.2
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 5.3e-60 235.0 201 61.7
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.3e-60 235.0 206 61.7
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 6.9e-60 234.6 195 63.6
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 9.1e-60 234.2 194 62.9
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.0e-59 233.0 173 66.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.6e-59 232.6 196 59.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 7.7e-59 231.1 194 62.4
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.8e-58 228.8 291 47.4
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.4e-57 226.9 200 59.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-56 223.0 163 66.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.6e-56 222.2 167 66.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.8e-55 219.9 200 58.5
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 2.3e-55 219.5 191 58.6
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.7e-55 218.0 150 72.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.1e-52 210.7 203 58.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 7.0e-52 208.0 169 62.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.9e-50 202.6 170 60.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 6.5e-50 201.4 123 78.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 6.1e-48 194.9 124 77.4
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.6e-46 189.5 166 58.4
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.7e-46 188.3 124 71.8
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-45 186.8 151 61.6
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.2e-45 184.5 198 52.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.9e-43 178.3 164 57.9
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.0e-42 177.6 186 52.2
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.1e-41 174.1 193 51.3
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.2e-38 164.1 113 69.9
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 9.8e-38 161.0 112 73.2
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.1e-36 157.5 103 75.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 150 53.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 5.4e-36 155.2 103 73.8
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.6e-35 153.7 191 44.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 7.2e-33 144.8 70 98.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 9.5e-33 144.4 158 47.5
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.6e-32 142.5 86 76.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.7e-32 142.1 174 44.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.2e-30 137.5 70 94.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.0e-30 136.7 173 42.8
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 3.8e-26 122.5 91 69.2
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 5.6e-25 118.6 99 60.6
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.8e-16 89.7 146 39.0
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.3e-15 86.7 211 33.6
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 9.8e-14 81.3 52 67.3
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 4.9e-13 79.0 183 31.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.4e-13 78.6 52 67.3
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.2e-11 74.3 72 54.2
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.0e-11 73.6 53 71.7
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.0e-10 71.2 62 59.7
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.8e-07 60.5 40 75.0


User provided reference genes

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