Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 0.0e+00 1192.2 623 100.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 0.0e+00 1085.1 621 90.8
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 0.0e+00 1085.1 621 90.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 0.0e+00 1083.2 619 90.3
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 0.0e+00 1081.2 621 90.5
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 0.0e+00 1075.8 624 89.4
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 8.5e-312 1073.2 621 90.5
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 1.6e-309 1065.4 641 87.4
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.0e-284 981.5 623 83.1
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 8.3e-282 973.4 624 82.1
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.4e-281 970.7 608 84.0
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 7.7e-280 966.8 620 82.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 2.2e-274 948.7 619 81.1
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 4.6e-264 914.4 624 76.9
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 6.0e-256 887.5 616 78.4
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 2.4e-225 785.8 623 65.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.8e-221 772.3 626 65.0
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 2.4e-220 769.2 631 64.8
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 8.7e-215 750.7 622 64.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.1e-214 750.4 625 62.2
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 9.6e-214 747.3 624 62.2
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 9.6e-214 747.3 624 62.0
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.1e-213 746.1 628 62.3
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.8e-213 745.7 621 63.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 1.5e-211 740.0 623 62.1
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.3e-207 726.9 630 60.5
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 8.7e-207 724.2 625 60.2
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 3.3e-206 722.2 621 60.1
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 2.8e-205 719.2 625 60.2
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.3e-202 710.3 622 59.2
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.8e-202 708.8 620 59.0
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 5.0e-202 708.4 631 59.4
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.4e-201 706.8 628 58.1
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.4e-201 706.8 618 59.1
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.9e-201 706.4 622 58.8
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.5e-201 704.9 618 58.7
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.9e-200 701.0 618 58.4
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.0e-199 700.7 628 59.2
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 6.7e-199 698.0 627 59.0
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.3e-197 693.7 659 58.0
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 4.1e-196 688.7 535 67.7
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 4.1e-196 688.7 617 58.0
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.5e-195 685.3 628 58.9
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.3e-194 683.7 620 57.6
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 8.5e-194 681.0 628 58.8
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.5e-193 679.5 620 56.9
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 4.2e-193 678.7 613 57.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.2e-192 677.2 620 57.4
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.6e-192 676.8 621 57.2
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.7e-192 676.0 609 56.8
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 3.6e-192 675.6 622 57.9
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 5.1e-191 671.8 623 56.5
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 3.3e-190 669.1 620 57.6
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.4e-190 668.7 620 56.8
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 4.4e-190 668.7 590 60.8
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 7.4e-190 667.9 622 56.4
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 9.7e-190 667.5 628 57.6
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.8e-188 663.3 609 56.3
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.4e-188 662.9 623 57.3
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 1.2e-187 660.6 626 56.1
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 7.7e-187 657.9 629 55.2
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.0e-186 657.5 627 54.5
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.3e-186 657.1 654 54.7
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 6.5e-186 654.8 663 53.5
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.9e-185 653.3 559 60.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 6.1e-184 648.3 558 61.3
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 8.2e-181 637.9 511 64.2
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.8e-180 636.7 511 64.0
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 2.7e-179 632.9 561 57.9
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 7.2e-177 624.8 591 55.7
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 9.4e-177 624.4 625 56.5
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 9.4e-177 624.4 631 53.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 4.7e-176 622.1 625 53.4
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.2e-174 617.5 621 53.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 4.8e-173 612.1 591 55.2
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 4.8e-173 612.1 625 53.6
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.4e-172 610.5 623 51.2
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.1e-172 609.4 617 53.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.7e-171 606.3 615 51.9
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 2.9e-170 602.8 618 53.9
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.0e-168 594.7 523 59.5
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 4.0e-167 592.4 557 57.3
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 5.2e-167 592.0 515 60.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.7e-165 587.0 657 49.5
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 2.9e-162 576.2 620 51.0
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 8.0e-160 568.2 446 66.6
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.2e-158 564.3 551 56.1
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.4e-156 555.4 553 55.0
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 7.0e-156 555.1 505 57.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.5e-155 552.7 460 63.5
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 3.0e-154 549.7 618 47.4
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 5.6e-153 545.4 620 48.1
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.0e-146 524.6 604 51.7
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 5.0e-146 522.3 465 59.8
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.1e-144 516.9 656 45.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 4.6e-139 499.2 511 62.2
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 4.6e-139 499.2 511 62.2
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 7.6e-134 481.9 623 45.7
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 2.1e-123 447.2 374 68.7
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.3e-122 444.5 387 58.9
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 4.3e-121 439.5 575 45.4
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.7e-115 420.2 358 61.5
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 1.0e-106 391.7 469 46.7
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 8.5e-93 345.5 387 51.4
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.9e-92 344.4 347 58.5
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.6e-91 341.3 347 58.2
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 3.0e-90 337.0 622 34.6
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 5.5e-84 316.2 623 36.1
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.7e-80 304.7 627 30.9
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 2.3e-74 284.3 615 30.7
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 4.1e-71 273.5 229 69.9
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 5.3e-71 273.1 164 91.5
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.4e-63 248.4 507 32.3
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.0e-62 244.6 367 43.3
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.0e-61 242.3 163 79.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.8e-58 231.5 269 47.6
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 4.0e-58 230.3 225 64.4
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.9e-44 184.9 179 53.1
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.5e-41 175.3 401 30.9
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 2.1e-35 154.8 142 55.6
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 8.0e-35 152.9 260 38.5
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.4e-32 143.3 130 62.3
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 3.2e-31 141.0 147 50.3
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.4e-31 140.2 406 31.5
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 3.5e-30 137.5 163 44.2
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.6e-29 133.3 142 48.6
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 8.1e-27 126.3 131 61.8
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.8e-26 125.2 372 31.7
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 4.1e-23 114.0 561 25.0
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.2e-19 102.4 321 29.3
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.8e-19 101.3 66 72.7
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.6e-19 100.9 131 46.6
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-17 95.9 113 46.0
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.4e-17 94.4 77 66.2
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 3.4e-17 94.4 63 68.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.1e-15 86.7 147 33.3
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 1.0e-13 82.8 87 51.7
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 9.6e-12 76.3 87 52.9
C07p02990 Brassica napus HOM05D016909 ORTHO05D027203 3.6e-11 74.3 87 52.9
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 4.0e-10 70.9 36 91.7
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 5.2e-10 70.5 141 29.8
A06p20760 Brassica napus HOM05D067795 ORTHO05D039273 2.6e-09 68.2 73 50.7
BcaC01g01884 Brassica carinata HOM05D067795 ORTHO05D039273 7.6e-09 66.6 73 50.7
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.4e-07 62.4 66 47.0
AL4G30280 Arabidopsis lyrata HOM05D014236 ORTHO05D015933 2.4e-07 61.6 98 40.8
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 4.2e-07 60.8 70 45.7
AL6G20030 Arabidopsis lyrata HOM05D001505 ORTHO05D013453 6.0e-06 57.0 33 90.9
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 6.0e-06 57.0 50 58.0
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 7.8e-06 56.6 40 67.5


User provided reference genes

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