Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 9.9e-138 495.4 297 100.0
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 2.8e-108 397.5 293 86.7
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.9e-105 387.5 293 84.0
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 2.9e-97 360.9 293 79.9
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.9e-94 350.5 293 80.2
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 3.9e-94 350.5 293 80.2
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.8e-91 341.7 265 75.1
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.4e-88 332.0 262 74.8
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 5.2e-86 323.6 266 73.7
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 6.7e-86 323.2 260 73.8
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 4.5e-82 310.5 296 72.6
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 4.5e-82 310.5 296 72.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.7e-81 308.5 263 71.5
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.2e-81 308.1 297 72.1
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 9.4e-80 302.8 265 69.8
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 6.8e-78 296.6 296 70.9
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.6e-74 285.4 264 65.9
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.4e-59 235.7 153 71.2
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.3e-57 228.4 123 87.0
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.9e-44 184.9 177 54.8
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.2e-42 179.5 176 51.7
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 3.0e-41 174.9 175 52.0
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.1e-38 164.9 158 53.8
BcaNung01493 Brassica carinata HOM05D006008 ORTHO05D007334 1.2e-37 162.9 129 85.3
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.2e-37 162.9 157 53.5
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.4e-37 161.0 157 52.9
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 7.6e-37 160.2 179 45.3
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 3.7e-36 157.9 179 45.3
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.4e-35 156.0 151 53.0
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.4e-35 155.2 179 44.7
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 3.2e-35 154.8 147 54.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 5.4e-35 154.1 175 43.4
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 5.4e-35 154.1 161 48.4
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 9.2e-35 153.3 149 51.0
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.2e-34 152.9 153 48.4
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 2.7e-34 151.8 147 49.0
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 3.5e-34 151.4 175 43.4
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.5e-34 151.4 149 51.0
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 3.5e-34 151.4 152 50.0
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.6e-34 151.0 151 47.7
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 7.8e-34 150.2 153 47.7
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.3e-33 148.7 188 43.6
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 3.0e-33 148.3 173 45.7
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 3.9e-33 147.9 149 49.7
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 5.1e-33 147.5 149 47.0
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 8.6e-33 146.7 173 46.2
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.5e-32 146.0 152 48.7
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.5e-32 145.2 148 48.6
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.3e-32 144.4 152 48.7
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.2e-31 142.9 160 48.1
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.6e-31 142.5 173 44.5
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 2.1e-31 142.1 175 44.6
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.1e-31 142.1 152 48.0
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 2.8e-31 141.7 150 49.3
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.8e-31 141.7 152 47.4
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 4.7e-31 141.0 149 45.6
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 8.1e-31 140.2 175 44.0
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 8.1e-31 140.2 152 47.4
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-30 139.0 152 46.1
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.8e-30 139.0 151 46.4
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 2.4e-30 138.7 175 43.4
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 8.9e-30 136.7 149 45.6
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.2e-29 136.3 151 48.3
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.4e-29 134.8 148 46.6
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 3.4e-29 134.8 151 45.0
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 3.4e-29 134.8 187 39.6
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 3.4e-29 134.8 183 38.8
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.4e-29 134.8 149 43.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 4.4e-29 134.4 146 45.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 5.8e-29 134.0 156 44.9
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.8e-28 131.3 148 45.9
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.9e-27 129.0 151 44.4
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 5.4e-27 127.5 177 39.0
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.3e-27 126.7 173 38.2
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.3e-27 126.7 173 38.2
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.6e-26 125.9 148 42.6
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 3.5e-26 124.8 157 42.7
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 6.0e-26 124.0 149 39.6
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.0e-25 123.2 148 43.2
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.3e-25 122.9 148 44.6
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.7e-25 122.5 173 38.2
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 3.0e-25 121.7 151 45.7
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 3.9e-25 121.3 152 42.8
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.1e-24 119.8 153 38.6
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.9e-24 119.0 151 42.4
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.5e-24 118.6 181 38.7
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.3e-24 118.2 132 43.9
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 3.3e-24 118.2 175 36.6
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 5.6e-24 117.5 179 34.1
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-23 115.5 130 44.6
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-23 115.2 155 40.0
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 3.6e-23 114.8 151 37.7
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.8e-22 112.5 139 42.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.0e-22 111.3 149 38.3
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 5.3e-22 110.9 152 41.4
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.0e-21 109.0 147 40.8
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.8e-21 107.5 120 44.2
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 7.6e-21 107.1 145 38.6
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.4e-20 103.6 179 33.5
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 4.2e-19 101.3 146 39.7
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.2e-19 101.3 173 33.5
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.6e-18 99.4 149 33.6
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 2.1e-18 99.0 139 40.3
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.7e-17 95.9 140 37.9
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.0e-17 95.1 139 39.6
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 5.1e-17 94.4 156 35.3
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.9e-16 92.4 110 42.7
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 2.5e-16 92.0 138 34.1
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 5.6e-16 90.9 152 31.6
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.8e-14 85.9 62 62.9
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.4e-14 85.5 62 64.5
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 6.9e-14 84.0 61 67.2
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 6.9e-14 84.0 53 69.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.6e-13 82.0 62 61.3
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.6e-13 82.0 56 67.9
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.5e-13 81.3 61 63.9
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 5.8e-13 80.9 62 61.3
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.3e-12 79.7 61 59.0
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.4e-12 77.0 60 61.7
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-11 76.6 89 44.9
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-10 73.2 61 59.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-10 72.8 61 52.5
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 7.9e-10 70.5 62 54.8
SEGI_33426 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 1.0e-09 70.1 124 35.5
SEGI_33441 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 1.0e-09 70.1 124 35.5
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 3.9e-09 68.2 144 27.1
SEGI_32921 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 4.3e-08 64.7 108 36.1
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 5.6e-08 64.3 127 31.5
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 7.4e-08 63.9 161 29.2
Duzib235G0398 Durio zibethinus HOM05D006749 ORTHO05D008352 9.6e-08 63.5 127 31.5
Gohir.A05G212100 Gossypium hirsutum HOM05D002007 ORTHO05D000355 9.6e-08 63.5 266 23.3
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.3e-07 63.2 119 31.1
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 1.3e-07 63.2 69 42.0
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 1.6e-07 62.8 133 29.3
Ciclev10019256m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.8e-07 62.0 180 26.1
Glyma.08G352500 Glycine max HOM05D001779 ORTHO05D001753 6.2e-07 60.8 160 45.0
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 8.1e-07 60.5 69 40.6
unitig_27.g25088 Utricularia gibba HOM05D006749 ORTHO05D008352 1.1e-06 60.1 127 26.8
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 1.4e-06 59.7 68 41.2
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.4e-06 59.7 68 41.2
TWI34G2010 Tripterygium wilfordii HOM05D007251 ORTHO05D009266 1.4e-06 59.7 183 28.4
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.8e-06 59.3 69 40.6
Os03g0159700 Oryza sativa ssp. japonica HOM05D008234 ORTHO05D010422 1.8e-06 59.3 221 24.9
SMO270G0123 Selaginella moellendorffii HOM05D000001 ORTHO05D376091 1.8e-06 59.3 163 27.0
GSVIVG01017111001 Vitis vinifera HOM05D006749 ORTHO05D008352 2.4e-06 58.9 127 30.7
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 3.1e-06 58.5 160 28.1
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 3.1e-06 58.5 69 39.1
Phvul.008G126700 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 3.1e-06 58.5 160 26.9
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 4.0e-06 58.2 69 36.2
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 4.0e-06 58.2 69 36.2
Lalb_Chr07g0181761 Lupinus albus HOM05D001779 ORTHO05D001753 4.0e-06 58.2 167 24.0
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 4.0e-06 58.2 140 27.1
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 4.0e-06 58.2 69 39.1
TPR.G31105 Trifolium pratense HOM05D001779 ORTHO05D001753 4.0e-06 58.2 157 28.7
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.0e-06 58.2 83 38.6
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.3e-06 57.8 196 29.1
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 5.3e-06 57.8 242 21.5
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 5.3e-06 57.8 133 27.8
SEGI_28689 Sequoiadendron giganteum HOM05D006749 ORTHO05D008352 5.3e-06 57.8 66 39.4
CiPaw.03G055100 Carya illinoinensis HOM05D000001 ORTHO05D000003 6.9e-06 57.4 173 25.4
Atru.chr11.1907 Acer truncatum HOM05D000001 ORTHO05D010008 9.0e-06 57.0 220 25.0
EL10Ac9g21998 Beta vulgaris HOM05D006749 ORTHO05D008352 9.0e-06 57.0 83 34.9
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 9.0e-06 57.0 152 23.7
Ca_26872_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 9.0e-06 57.0 157 28.7
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 9.0e-06 57.0 69 39.1
Duzib235G0336 Durio zibethinus HOM05D000001 ORTHO05D010525 9.0e-06 57.0 177 26.0
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 9.0e-06 57.0 108 31.5
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 9.0e-06 57.0 69 37.7
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 9.0e-06 57.0 160 28.1


User provided reference genes

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