Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 3.9e-98 361.7 211 100.0
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 3.3e-57 225.7 219 61.6
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 2.1e-56 223.0 211 61.1
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 6.2e-56 221.5 219 60.7
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 5.3e-55 218.4 219 60.3
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 2.6e-54 216.1 216 61.1
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 5.5e-52 208.4 219 58.4
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.1e-52 208.0 220 59.1
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.3e-50 203.8 211 60.2
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 4.3e-49 198.7 219 69.9
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 9.6e-49 197.6 118 84.7
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 9.6e-49 197.6 118 84.7
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 2.1e-48 196.4 231 56.3
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.3e-40 170.6 217 60.4
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 2.2e-37 159.8 220 60.9
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 1.1e-36 157.5 213 49.8
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 7.9e-35 151.4 221 48.4
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 2.5e-33 146.4 170 50.0
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 2.5e-33 146.4 170 51.2
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 2.5e-33 146.4 170 51.2
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 2.5e-33 146.4 170 50.0
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 3.3e-33 146.0 172 51.2
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 7.4e-33 144.8 170 50.6
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.7e-32 142.5 213 44.6
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.0e-30 136.7 240 49.2
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 7.7e-30 134.8 216 44.4
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 2.2e-29 133.3 169 47.9
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 7.9e-27 124.8 212 39.6
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 3.0e-26 122.9 207 43.0
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 3.0e-26 122.9 215 40.0
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 6.7e-26 121.7 163 46.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 1.5e-25 120.6 215 40.5
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.5e-25 120.6 202 41.1
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.5e-25 120.6 213 45.1
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 3.3e-25 119.4 213 39.0
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 3.3e-25 119.4 178 41.6
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 4.4e-25 119.0 217 40.6
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 9.7e-25 117.9 218 37.6
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 6.3e-24 115.2 213 37.6
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 6.3e-24 115.2 174 42.5
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 7.0e-23 111.7 214 36.9
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 7.0e-23 111.7 214 40.7
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 9.1e-23 111.3 175 41.7
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.5e-22 110.5 184 38.6
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 2.0e-22 110.2 173 37.6
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 4.5e-22 109.0 213 38.0
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 7.7e-22 108.2 210 38.6
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 1.0e-21 107.8 211 38.9
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.3e-21 107.5 174 40.2
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.3e-21 107.5 174 40.2
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 2.2e-21 106.7 215 37.7
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 2.9e-21 106.3 211 35.1
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 5.0e-21 105.5 213 37.1
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 2.5e-20 103.2 195 34.9
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 3.2e-20 102.8 173 36.4
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 5.5e-20 102.1 193 43.0
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 7.2e-20 101.7 210 35.2
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 7.2e-20 101.7 195 34.4
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 7.2e-20 101.7 218 36.7
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 9.4e-20 101.3 213 45.5
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 2.7e-19 99.8 227 34.4
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 3.6e-19 99.4 219 33.3
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 6.1e-19 98.6 216 35.2
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 6.1e-19 98.6 195 35.4
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 6.1e-19 98.6 172 42.4
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 8.0e-19 98.2 202 36.1
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 8.0e-19 98.2 189 37.0
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 1.0e-18 97.8 188 37.8
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.0e-18 97.8 177 43.5
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.4e-18 97.4 182 37.4
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.4e-18 97.4 182 36.8
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.8e-18 97.1 209 34.4
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 2.3e-18 96.7 184 38.6
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 4.0e-18 95.9 206 35.4
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 5.2e-18 95.5 172 38.4
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 8.8e-18 94.7 170 34.1
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.5e-17 94.0 176 35.8
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 2.6e-17 93.2 220 33.6
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 2.6e-17 93.2 190 33.7
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.3e-17 92.8 194 40.7
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 4.4e-17 92.4 205 37.1
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 4.4e-17 92.4 175 42.3
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 1.3e-16 90.9 199 33.7
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.7e-16 90.5 172 37.8
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.7e-16 89.4 190 29.5
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 3.7e-16 89.4 175 36.0
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 6.3e-16 88.6 192 32.3
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 6.3e-16 88.6 184 34.2
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 8.2e-16 88.2 186 33.3
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 8.2e-16 88.2 191 35.1
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 8.2e-16 88.2 172 35.5
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 1.1e-15 87.8 200 33.5
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.1e-15 87.8 191 35.1
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 2.4e-15 86.7 169 34.9
BcaC04g22405 Brassica carinata HOM05D005169 ORTHO05D006436 3.1e-15 86.3 101 57.4
C09p19720 Brassica napus HOM05D005169 ORTHO05D006436 3.1e-15 86.3 101 57.4
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 3.1e-15 86.3 173 33.5
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 9.1e-15 84.7 185 35.1
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 9.1e-15 84.7 214 31.3
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.6e-14 84.0 174 36.8
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 2.0e-14 83.6 185 31.9
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.5e-14 82.8 174 36.8
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.9e-14 82.0 173 30.6
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.0e-13 81.3 202 32.2
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 1.7e-13 80.5 214 28.0
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.9e-13 79.7 173 35.3
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 3.8e-13 79.3 194 43.8
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 3.8e-13 79.3 171 31.6
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 3.8e-13 79.3 187 33.7
A02p02660 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-12 77.8 52 78.8
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.5e-12 77.4 207 33.3
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 2.5e-12 76.6 203 30.5
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 5.5e-12 75.5 172 32.0
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 9.4e-12 74.7 161 32.9
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 1.2e-11 74.3 172 32.0
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.6e-11 73.9 119 36.1
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 2.1e-11 73.6 166 31.9
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.1e-11 73.6 173 33.5
BcaC08g44071 Brassica carinata HOM05D005169 ORTHO05D006436 2.7e-11 73.2 36 94.4
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 4.7e-11 72.4 167 32.9
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 4.7e-11 72.4 155 29.7
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 1.8e-10 70.5 62 56.5
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 1.8e-10 70.5 166 36.7
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 5.2e-10 68.9 169 27.8
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 5.2e-10 68.9 187 31.0
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 9.8e-09 64.7 147 33.3
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 1.7e-08 63.9 92 40.2
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 3.7e-08 62.8 38 78.9
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.8e-07 60.5 187 28.9
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 2.4e-07 60.1 71 47.9
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 7.0e-07 58.5 73 42.5
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 9.1e-07 58.2 158 27.8
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 5.9e-06 55.5 38 60.5


User provided reference genes

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