Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 8.1e-64 246.9 124 100.0
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 7.1e-60 233.8 120 97.5
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 7.1e-60 233.8 120 97.5
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 2.1e-59 232.3 120 96.7
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 2.1e-59 232.3 120 96.7
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 2.1e-59 232.3 120 96.7
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 6.0e-59 230.7 120 95.8
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 6.0e-59 230.7 120 95.8
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 1.3e-58 229.6 120 95.8
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 1.3e-58 229.6 120 95.8
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 1.3e-58 229.6 120 95.8
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 2.3e-58 228.8 120 95.8
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 3.0e-58 228.4 119 95.0
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 2.5e-57 225.3 120 92.5
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 2.8e-56 221.9 119 92.4
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 6.2e-56 220.7 119 92.4
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 1.4e-55 219.5 119 91.6
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 1.0e-53 213.4 120 87.5
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 3.8e-53 211.5 121 85.1
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 5.0e-53 211.1 113 93.8
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 8.2e-48 193.7 103 93.2
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 2.0e-46 189.1 103 91.3
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 3.4e-46 188.3 117 76.1
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 3.4e-46 188.3 118 76.3
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 7.7e-46 187.2 119 75.6
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 7.7e-46 187.2 118 75.4
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 1.7e-45 186.0 119 73.9
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 3.8e-45 184.9 118 75.4
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 6.5e-45 184.1 118 77.1
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 6.5e-45 184.1 121 72.7
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 6.5e-45 184.1 118 74.6
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 6.5e-45 184.1 118 76.3
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 8.5e-45 183.7 118 77.1
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 8.5e-45 183.7 118 76.3
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.1e-44 183.3 118 75.4
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.1e-44 183.3 118 75.4
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 1.9e-44 182.6 118 74.6
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 1.9e-44 182.6 122 73.0
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 2.5e-44 182.2 126 72.2
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 2.5e-44 182.2 118 75.4
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 3.2e-44 181.8 120 70.8
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 4.2e-44 181.4 124 72.6
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 5.5e-44 181.0 122 72.1
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 5.5e-44 181.0 122 72.1
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 5.5e-44 181.0 121 74.4
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 7.2e-44 180.6 117 71.8
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 7.2e-44 180.6 117 71.8
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 9.4e-44 180.3 118 72.9
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 1.2e-43 179.9 121 73.6
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 3.6e-43 178.3 121 68.6
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 4.6e-43 177.9 126 70.6
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 7.9e-43 177.2 118 71.2
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.0e-42 176.8 122 70.5
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.0e-42 176.8 121 69.4
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.0e-42 176.8 121 70.2
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 1.4e-42 176.4 121 73.6
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 1.8e-42 176.0 122 68.0
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.8e-42 176.0 120 71.7
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 3.0e-42 175.3 120 72.5
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.1e-41 173.3 118 71.2
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 2.5e-41 172.2 119 68.9
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 3.3e-41 171.8 121 65.3
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 4.3e-41 171.4 119 68.9
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 5.7e-41 171.0 118 73.7
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 5.7e-41 171.0 121 70.2
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 5.7e-41 171.0 120 68.3
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 7.4e-41 170.6 120 68.3
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 9.7e-41 170.2 120 68.3
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 1.3e-40 169.9 136 64.7
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 1.3e-40 169.9 121 66.9
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 2.2e-40 169.1 118 72.9
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 2.2e-40 169.1 118 70.3
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 2.2e-40 169.1 121 68.6
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 2.8e-40 168.7 120 66.7
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 4.8e-40 167.9 124 66.1
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 4.8e-40 167.9 123 65.9
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 4.8e-40 167.9 113 69.9
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 6.3e-40 167.5 118 72.0
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 8.2e-40 167.2 120 67.5
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 8.2e-40 167.2 118 68.6
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 8.2e-40 167.2 119 65.5
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 1.4e-39 166.4 117 67.5
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 5.3e-39 164.5 123 65.0
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 3.4e-38 161.8 117 66.7
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.3e-37 159.8 105 71.4
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.7e-37 159.5 113 70.8
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 2.9e-37 158.7 113 71.7
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 8.5e-37 157.1 111 67.6
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 8.5e-37 157.1 105 71.4
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.4e-36 156.4 106 72.6
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 1.6e-35 152.9 115 66.1
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 2.1e-35 152.5 120 59.2
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 4.7e-35 151.4 145 54.5
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 4.7e-35 151.4 105 69.5
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 6.1e-35 151.0 135 60.7
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 7.9e-35 150.6 119 60.5
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 1.0e-34 150.2 134 57.5
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 3.9e-34 148.3 113 63.7
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 5.1e-34 147.9 100 71.0
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 1.5e-33 146.4 143 53.8
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 2.0e-33 146.0 113 63.7
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 3.3e-33 145.2 136 56.6
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 2.2e-32 142.5 119 59.7
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 8.2e-32 140.6 126 59.5
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 8.2e-32 140.6 118 61.9
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 1.4e-31 139.8 133 49.6
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 1.2e-30 136.7 101 65.3
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 7.7e-30 134.0 88 75.0
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 7.7e-30 134.0 213 39.4
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 4.2e-28 128.3 120 56.7
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 4.2e-28 128.3 82 72.0
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 9.4e-28 127.1 90 74.4
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 3.0e-26 122.1 106 59.4
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 3.0e-26 122.1 106 57.5
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 2.2e-24 115.9 68 79.4
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 6.3e-24 114.4 67 79.1
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 1.4e-23 113.2 106 56.6
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 1.8e-23 112.8 81 69.1
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 8.5e-21 104.0 69 68.1
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 7.2e-20 100.9 74 67.6
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 9.4e-20 100.5 121 43.8
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.0e-18 97.1 117 40.2
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 1.4e-18 96.7 144 45.8
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.0e-17 92.8 81 50.6
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 2.6e-17 92.4 60 75.0
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 2.8e-16 89.0 95 51.6
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 4.1e-15 85.1 68 60.3
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 4.2e-12 75.1 45 75.6
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 6.8e-10 67.8 61 47.5
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 9.2e-07 57.4 116 33.6


User provided reference genes

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