Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03098 Brassica carinata HOM05D009188 ORTHO05D011362 3.2e-111 405.2 223 100.0
C02p07280 Brassica napus HOM05D009188 ORTHO05D011362 3.2e-111 405.2 223 100.0
BolC2t06659H Brassica oleracea HOM05D009188 ORTHO05D011362 1.0e-96 357.1 200 99.5
Sp6g29310 Schrenkiella parvula HOM05D009188 ORTHO05D011362 1.0e-72 277.3 255 67.1
BraA02t05239Z Brassica rapa HOM05D009188 ORTHO05D011362 1.7e-72 276.6 232 75.0
BcaC03g13450 Brassica carinata HOM05D009188 ORTHO05D011362 5.6e-71 271.6 135 99.3
Thhalv10014334m.g Eutrema salsugineum HOM05D009188 ORTHO05D011362 4.0e-69 265.4 248 64.9
BraA10t44458Z Brassica rapa HOM05D009188 ORTHO05D011362 3.0e-64 249.2 257 62.6
BcaC04g19015 Brassica carinata HOM05D009188 ORTHO05D011362 1.1e-63 247.3 246 67.9
BolC9t59079H Brassica oleracea HOM05D009188 ORTHO05D011362 1.1e-63 247.3 246 67.9
C09p62410 Brassica napus HOM05D009188 ORTHO05D011362 3.6e-62 242.3 246 63.8
A10p23940 Brassica napus HOM05D009188 ORTHO05D011362 4.7e-62 241.9 257 61.5
A02p02700 Brassica napus HOM05D009188 ORTHO05D011362 1.7e-59 233.4 234 63.2
AT5G14730 Arabidopsis thaliana HOM05D009188 ORTHO05D011362 2.9e-59 232.6 246 58.9
BcaB08g36952 Brassica carinata HOM05D009188 ORTHO05D011362 1.4e-58 230.3 256 60.5
Carub.0006s1290 Capsella rubella HOM05D009188 ORTHO05D011362 1.2e-54 217.2 253 60.9
AL6G25500 Arabidopsis lyrata HOM05D009188 ORTHO05D011362 8.6e-48 194.5 251 58.6
CARHR198580 Cardamine hirsuta HOM05D009188 ORTHO05D011362 1.3e-43 180.6 240 53.8
Aa31LG11G14730 Aethionema arabicum HOM05D009188 ORTHO05D011362 3.0e-40 169.5 234 53.4
Aa31LG5G10630 Aethionema arabicum HOM05D009188 ORTHO05D011362 3.6e-30 136.0 266 41.4
CARHR075430 Cardamine hirsuta HOM05D009188 ORTHO05D011362 1.3e-27 127.5 241 45.6
BcaC04g19014 Brassica carinata HOM05D009188 ORTHO05D011362 1.7e-27 127.1 105 68.6
Carub.0003s0057 Capsella rubella HOM05D009188 ORTHO05D011362 8.4e-27 124.8 237 46.8
AT3G01513 Arabidopsis thaliana HOM05D009188 ORTHO05D011362 3.2e-26 122.9 237 42.2
Sp3g00550 Schrenkiella parvula HOM05D009188 ORTHO05D011362 4.2e-26 122.5 223 42.2
AL3G10650 Arabidopsis lyrata HOM05D009188 ORTHO05D011362 3.5e-25 119.4 236 42.4
BcaNung03099 Brassica carinata HOM05D009188 ORTHO05D011362 4.6e-25 119.0 61 98.4
A05p44500 Brassica napus HOM05D009188 ORTHO05D011362 3.9e-24 115.9 227 37.9
THA.LOC104822391 Tarenaya hassleriana HOM05D009188 ORTHO05D011362 6.7e-24 115.2 248 41.9
BcaC05g30409 Brassica carinata HOM05D009188 ORTHO05D011362 2.5e-23 113.2 224 38.8
C09p75090 Brassica napus HOM05D009188 ORTHO05D011362 7.9e-17 91.7 224 34.4
BolC5t35155H Brassica oleracea HOM05D009188 ORTHO05D011362 7.9e-17 91.7 224 34.4
Gohir.A10G103400 Gossypium hirsutum HOM05D001111 ORTHO05D000939 1.4e-13 80.9 264 33.0
Gohir.D07G227700 Gossypium hirsutum HOM05D001111 ORTHO05D000939 1.8e-13 80.5 242 32.6
Gohir.A07G221000 Gossypium hirsutum HOM05D001111 ORTHO05D000939 4.0e-13 79.3 242 32.2
Gorai.001G262600 Gossypium raimondii HOM05D001111 ORTHO05D000939 6.9e-13 78.6 242 32.2
BcaB07g30140 Brassica carinata HOM05D001111 ORTHO05D000939 5.8e-12 75.5 248 30.6
Aa31LG2G4860 Aethionema arabicum HOM05D001111 ORTHO05D000939 1.3e-11 74.3 262 31.3
Gohir.D10G087500 Gossypium hirsutum HOM05D001111 ORTHO05D000939 1.3e-11 74.3 257 31.9
Gorai.011G095800 Gossypium raimondii HOM05D001111 ORTHO05D000939 2.9e-11 73.2 257 31.5
Duzib147G1636 Durio zibethinus HOM05D001111 ORTHO05D000939 8.4e-11 71.6 271 29.5
Thhalv10027885m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 1.1e-10 71.2 239 33.1
Thecc.04G010500 Theobroma cacao HOM05D001111 ORTHO05D000939 1.4e-10 70.9 266 31.6
Duzib187G0831 Durio zibethinus HOM05D001111 ORTHO05D000939 1.9e-10 70.5 274 30.7
Atru.chr6.2310 Acer truncatum HOM05D001111 ORTHO05D000939 3.2e-10 69.7 248 29.8
TWI23G0219 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 1.6e-09 67.4 263 27.8
AL5G17370 Arabidopsis lyrata HOM05D001111 ORTHO05D000939 2.1e-09 67.0 239 30.1
BcaC04g19013 Brassica carinata HOM05D009188 ORTHO05D011362 2.1e-09 67.0 43 81.4
Sc04g0001810 Simmondsia chinensis HOM05D001111 ORTHO05D000939 2.1e-09 67.0 131 38.2
C07p37050 Brassica napus HOM05D001111 ORTHO05D000939 3.5e-09 66.2 252 31.3
BcaC06g33776 Brassica carinata HOM05D001111 ORTHO05D000939 4.6e-09 65.9 249 31.7
BolC7t44217H Brassica oleracea HOM05D001111 ORTHO05D000939 4.6e-09 65.9 249 31.7
Oeu060136.1 Olea europaea HOM05D001111 ORTHO05D000939 4.6e-09 65.9 248 29.4
Atru.chr9.2477 Acer truncatum HOM05D001111 ORTHO05D000939 7.9e-09 65.1 152 35.5
SalBow1G0495 Salvia bowleyana HOM05D001111 ORTHO05D000939 7.9e-09 65.1 234 31.2
CDE06G1645 Ceratophyllum demersum HOM05D000875 ORTHO05D000939 1.0e-08 64.7 141 34.8
Duzib264G1045 Durio zibethinus HOM05D001111 ORTHO05D000939 1.0e-08 64.7 271 31.0
C02p54510 Brassica napus HOM05D001111 ORTHO05D000939 2.3e-08 63.5 254 29.9
BcaC03g17493 Brassica carinata HOM05D001111 ORTHO05D000939 3.0e-08 63.2 254 29.9
BolC2t11514H Brassica oleracea HOM05D001111 ORTHO05D000939 3.0e-08 63.2 254 29.9
Peaxi162Scf00129g00116 Petunia axillaris HOM05D001111 ORTHO05D000939 3.0e-08 63.2 228 27.2
Manes.14G065800 Manihot esculenta HOM05D001111 ORTHO05D000939 6.7e-08 62.0 274 28.5
Sc16g0003590 Simmondsia chinensis HOM05D001111 ORTHO05D000939 6.7e-08 62.0 238 25.6
Sopen02g031580 Solanum pennellii HOM05D001111 ORTHO05D000939 8.7e-08 61.6 263 30.4
SalBow7G3341 Salvia bowleyana HOM05D001111 ORTHO05D000939 1.1e-07 61.2 254 30.3
Manes.06G104800 Manihot esculenta HOM05D001111 ORTHO05D000939 1.9e-07 60.5 278 28.1
Nitab4.5_0007719g0040 Nicotiana tabacum HOM05D001111 ORTHO05D000939 1.9e-07 60.5 145 34.5
Solyc02g086810.1 Solanum lycopersicum HOM05D001111 ORTHO05D000939 1.9e-07 60.5 265 30.6
Lj7P592T34 Lonicera japonica HOM05D001111 ORTHO05D000939 2.5e-07 60.1 128 36.7
Nitab4.5_0004348g0010 Nicotiana tabacum HOM05D001111 ORTHO05D000939 2.5e-07 60.1 278 29.1
Nitab4.5_0009783g0040 Nicotiana tabacum HOM05D001111 ORTHO05D000939 2.5e-07 60.1 145 34.5
TWI39G0739 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 2.5e-07 60.1 139 33.8
TAR629G2362 Trochodendron aralioides HOM05D001111 ORTHO05D000939 2.5e-07 60.1 160 32.5
Aqoxy3G02945 Aquilegia oxysepala HOM05D001111 ORTHO05D000939 3.3e-07 59.7 160 34.4
CDE04G3478 Ceratophyllum demersum HOM05D000875 ORTHO05D000684 3.3e-07 59.7 265 28.7
Peaxi162Scf00700g00061 Petunia axillaris HOM05D001111 ORTHO05D000939 3.3e-07 59.7 266 30.8
PGSC0003DMG400000492 Solanum tuberosum HOM05D001111 ORTHO05D000939 3.3e-07 59.7 148 34.5
Sopen03g033450 Solanum pennellii HOM05D001111 ORTHO05D000939 4.3e-07 59.3 140 36.4
Thhalv10004779m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 5.7e-07 58.9 266 29.3
Oeu043052.2 Olea europaea HOM05D001111 ORTHO05D000939 5.7e-07 58.9 134 35.1
Phvul.009G178600 Phaseolus vulgaris HOM05D001111 ORTHO05D000939 5.7e-07 58.9 272 25.7
TWI31G0459 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 5.7e-07 58.9 297 27.3
Ah.11g051620 Amaranthus hybridus HOM05D001111 ORTHO05D000939 7.4e-07 58.5 173 33.5
Cpa.g.sc76.61 Carica papaya HOM05D001111 ORTHO05D000939 7.4e-07 58.5 290 27.6
PGSC0003DMG400024504 Solanum tuberosum HOM05D001111 ORTHO05D000939 9.6e-07 58.2 143 35.7
TWI56G0447 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 9.6e-07 58.2 156 34.6
AT3G27880 Arabidopsis thaliana HOM05D001111 ORTHO05D000939 1.3e-06 57.8 252 34.9
A06p40830 Brassica napus HOM05D001111 ORTHO05D000939 1.3e-06 57.8 252 31.7
C04p47030 Brassica napus HOM05D001111 ORTHO05D000939 1.3e-06 57.8 240 30.8
BolC4t26298H Brassica oleracea HOM05D001111 ORTHO05D000939 1.3e-06 57.8 240 30.8
BraA06t27004Z Brassica rapa HOM05D001111 ORTHO05D000939 1.3e-06 57.8 253 31.6
Oeu016383.1 Olea europaea HOM05D001111 ORTHO05D000939 1.3e-06 57.8 142 33.8
QL10p011670 Quercus lobata HOM05D001111 ORTHO05D000939 1.3e-06 57.8 132 34.1
Solyc03g114350.1 Solanum lycopersicum HOM05D001111 ORTHO05D000939 1.3e-06 57.8 140 35.7
A02p35670 Brassica napus HOM05D001111 ORTHO05D000939 1.6e-06 57.4 253 29.2
BraA02t08569Z Brassica rapa HOM05D001111 ORTHO05D000939 1.6e-06 57.4 253 29.2
DCAR_021689 Daucus carota HOM05D001111 ORTHO05D000939 1.6e-06 57.4 231 28.1
Dinv20655 Davidia involucrata HOM05D001111 ORTHO05D000939 1.6e-06 57.4 184 32.1
Peaxi162Scf00700g00066 Petunia axillaris HOM05D001111 ORTHO05D000939 1.6e-06 57.4 259 30.1
Lj9P449T21 Lonicera japonica HOM05D001111 ORTHO05D000939 2.1e-06 57.0 268 27.2
Lju41C35T12 Lonicera japonica HOM05D001111 ORTHO05D000939 2.1e-06 57.0 140 33.6
PGSC0003DMG400045223 Solanum tuberosum HOM05D001111 ORTHO05D000939 2.1e-06 57.0 276 26.8
BcaC06g30955 Brassica carinata HOM05D001111 ORTHO05D000939 2.8e-06 56.6 254 30.7
CARHR149390 Cardamine hirsuta HOM05D001111 ORTHO05D000939 2.8e-06 56.6 240 27.9
RcHm_v2.0_Chr2g0172191 Rosa chinensis HOM05D001111 ORTHO05D000939 2.8e-06 56.6 267 27.7
MBI16_g32208_MAGBIO Magnolia biondii HOM05D001111 ORTHO05D000939 3.7e-06 56.2 294 28.9
Nitab4.5_0007208g0010 Nicotiana tabacum HOM05D001111 ORTHO05D000939 3.7e-06 56.2 288 27.1
Migut.I00012 Erythranthe guttata HOM05D001111 ORTHO05D000939 4.8e-06 55.8 281 26.7
Nitab4.5_0006281g0050 Nicotiana tabacum HOM05D001111 ORTHO05D000939 4.8e-06 55.8 151 34.4
THA.LOC104825335 Tarenaya hassleriana HOM05D001111 ORTHO05D000939 4.8e-06 55.8 264 29.9
Glyma.06G182500 Glycine max HOM05D001111 ORTHO05D000939 6.3e-06 55.5 133 42.1
VMungo1309G2238 Vigna mungo HOM05D001111 ORTHO05D000939 6.3e-06 55.5 129 31.8
CAN.G464.41 Capsicum annuum HOM05D001111 ORTHO05D000939 8.2e-06 55.1 260 27.7
TAR371G1086 Trochodendron aralioides HOM05D001111 ORTHO05D000939 8.2e-06 55.1 158 32.9


User provided reference genes

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