Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 0.0e+00 1090.5 551 100.0
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 5.6e-290 1000.3 555 89.2
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 5.8e-287 990.3 555 89.5
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 3.7e-286 987.6 549 88.2
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 4.9e-286 987.3 525 90.9
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 4.1e-285 984.2 555 87.9
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 2.3e-275 951.8 544 86.8
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 7.3e-274 946.8 521 90.6
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.7e-270 935.6 544 84.4
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 2.2e-270 935.3 529 85.1
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 1.3e-259 899.4 547 80.1
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 1.3e-257 892.9 507 85.2
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 3.3e-242 841.6 526 76.6
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.4e-216 756.5 526 69.2
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 5.0e-214 748.0 518 69.5
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 5.0e-214 748.0 508 70.9
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 4.2e-213 745.0 526 68.8
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 1.6e-212 743.0 508 70.1
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.6e-212 743.0 508 69.9
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 3.6e-212 741.9 506 71.5
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.6e-212 741.9 508 70.3
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 4.7e-212 741.5 521 69.9
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.4e-211 740.0 508 69.3
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 2.3e-211 739.2 507 70.4
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 4.0e-211 738.4 515 69.5
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.5e-210 736.5 508 70.1
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-210 736.1 515 68.9
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 4.4e-210 734.9 521 68.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 5.7e-210 734.6 508 70.9
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 7.5e-210 734.2 518 68.7
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.2e-209 732.6 519 68.4
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.8e-208 729.6 508 68.5
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 2.4e-208 729.2 518 68.5
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.0e-207 726.1 526 67.5
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 2.7e-207 725.7 506 69.6
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 5.9e-207 724.5 506 67.4
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.9e-206 722.2 507 68.6
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 2.9e-206 722.2 509 68.0
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 5.0e-206 721.5 519 66.3
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 5.0e-206 721.5 508 67.9
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 1.9e-205 719.5 509 66.2
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 3.2e-205 718.8 508 68.9
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 7.2e-205 717.6 516 66.3
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 9.5e-205 717.2 503 68.8
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 6.1e-204 714.5 508 66.9
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 8.0e-204 714.1 512 66.4
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 1.8e-203 713.0 513 66.1
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 1.8e-203 713.0 523 65.8
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.5e-202 709.9 504 67.3
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 3.4e-202 708.8 521 66.2
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 9.8e-202 707.2 507 67.5
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 2.2e-201 706.1 524 65.5
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 1.1e-200 703.7 521 65.1
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.4e-200 702.6 508 66.3
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 5.4e-200 701.4 523 64.6
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 7.0e-200 701.0 523 64.2
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 9.2e-200 700.7 508 67.7
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 9.2e-200 700.7 510 65.1
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 9.2e-200 700.7 504 66.9
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.0e-199 699.5 507 65.9
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 2.7e-199 699.1 517 65.8
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 3.5e-199 698.7 522 65.9
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 7.7e-199 697.6 520 66.5
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.7e-198 696.4 507 65.7
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.7e-198 696.4 501 66.5
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 2.9e-198 695.7 504 66.1
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.8e-198 695.3 507 65.5
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 3.8e-198 695.3 523 64.1
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 6.6e-198 694.5 517 65.6
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 4.3e-197 691.8 523 63.9
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 9.5e-197 690.6 381 88.5
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 9.5e-197 690.6 484 69.4
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.3e-195 686.0 532 62.8
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 3.0e-195 685.6 509 67.0
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 6.8e-195 684.5 480 67.9
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 1.5e-194 683.3 491 66.0
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 5.7e-194 681.4 529 63.3
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.9e-193 679.1 524 63.4
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.1e-192 677.2 536 63.1
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 5.4e-192 674.9 491 66.2
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 4.3e-189 665.2 518 62.5
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 2.1e-188 662.9 507 63.5
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 6.2e-188 661.4 516 62.2
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.0e-187 660.6 491 66.4
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 4.1e-184 648.7 525 61.3
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 3.9e-182 642.1 505 61.6
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 1.3e-177 627.1 466 64.6
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 2.9e-177 625.9 427 70.0
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 2.1e-175 619.8 424 71.5
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.4e-171 607.1 498 61.0
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.4e-168 597.0 572 54.7
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.3e-166 590.5 507 59.0
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.8e-164 582.8 531 53.5
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.8e-163 580.1 434 64.1
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 3.2e-160 569.3 420 66.7
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.6e-156 557.0 538 51.5
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 1.6e-156 557.0 538 51.5
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 7.1e-152 541.6 481 54.1
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 1.3e-150 537.3 444 60.4
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.1e-149 534.3 425 62.8
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.6e-148 530.4 397 65.0
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 6.2e-148 528.5 383 68.7
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 2.9e-145 519.6 380 66.8
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.0e-142 509.6 376 66.5
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.1e-133 481.1 307 72.6
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.6e-127 459.1 508 50.4
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.4e-122 443.0 494 51.4
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 3.4e-122 443.0 490 50.4
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 5.7e-117 425.6 495 49.1
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 1.8e-110 404.1 439 51.0
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 8.5e-105 385.2 288 67.4
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 6.3e-92 342.4 465 40.4
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 6.6e-81 305.8 211 67.3
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.6e-66 256.5 247 53.4
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 7.1e-59 232.6 194 62.9
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 1.0e-49 202.2 205 52.7
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 3.9e-49 200.3 165 57.6
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 3.6e-47 193.7 140 67.1
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.5e-45 188.3 123 68.3
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.6e-45 187.6 123 69.9
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.4e-43 181.8 125 64.0
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 8.7e-41 172.6 145 57.2
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.8e-38 164.9 499 27.3
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.1e-30 137.5 91 69.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 1.2e-29 135.6 111 62.2
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 1.2e-29 135.6 111 62.2
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 1.2e-29 135.6 111 62.2
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 7.9e-26 122.9 80 71.2
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 6.7e-25 119.8 142 48.6
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.5e-21 108.6 87 63.2
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.2e-19 100.9 75 61.3
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 4.6e-10 70.5 59 52.5
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.4e-09 68.9 298 24.5
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 6.7e-09 66.6 260 26.2
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 1.1e-08 65.9 332 23.8
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.1e-08 65.9 266 23.7
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.2e-07 61.6 336 23.8
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.8e-07 61.2 217 24.4
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 8.2e-07 59.7 258 26.0
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 8.2e-07 59.7 217 24.9
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 8.2e-07 59.7 262 26.7
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 1.1e-06 59.3 234 24.4
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 1.1e-06 59.3 219 24.2
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.1e-06 59.3 209 24.9
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 1.4e-06 58.9 264 26.9
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.4e-06 58.2 275 25.8
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 4.1e-06 57.4 220 24.1
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 5.3e-06 57.0 228 25.0
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.3e-06 57.0 225 24.0
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.3e-06 57.0 225 24.0
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.3e-06 57.0 225 24.0
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 5.3e-06 57.0 308 23.1
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 6.9e-06 56.6 256 24.2
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 6.9e-06 56.6 125 31.2


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