Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03057 Brassica carinata HOM05D006334 ORTHO05D008320 1.5e-87 327.0 302 100.0
C01p23260 Brassica napus HOM05D006334 ORTHO05D008320 4.1e-85 318.9 302 98.7
BraA01t01781Z Brassica rapa HOM05D006334 ORTHO05D008320 4.1e-85 318.9 302 98.3
BolC1t02259H Brassica oleracea HOM05D006334 ORTHO05D008320 3.5e-84 315.8 302 98.3
Sp7g25090 Schrenkiella parvula HOM05D006334 ORTHO05D008320 3.3e-82 309.3 302 91.7
Thhalv10025846m.g Eutrema salsugineum HOM05D006334 ORTHO05D008320 7.2e-82 308.1 302 90.7
AL7G25680 Arabidopsis lyrata HOM05D006334 ORTHO05D008320 1.0e-80 304.3 303 82.2
CARHR234770 Cardamine hirsuta HOM05D006334 ORTHO05D008320 1.5e-79 300.4 302 83.4
AT4G27120 Arabidopsis thaliana HOM05D006334 ORTHO05D008320 4.4e-79 298.9 302 86.4
Carub.0007s1372 Capsella rubella HOM05D006334 ORTHO05D008320 7.5e-79 298.1 302 86.4
Aa31LG5G10300 Aethionema arabicum HOM05D006334 ORTHO05D008320 1.2e-76 290.8 302 81.5
BolC7t46013H Brassica oleracea HOM05D006334 ORTHO05D001501 6.6e-75 285.0 297 94.9
A01p18260 Brassica napus HOM05D006334 ORTHO05D008320 2.5e-74 283.1 285 97.9
A03p57090 Brassica napus HOM05D006334 ORTHO05D008320 1.2e-71 274.2 307 92.8
BraA03t14779Z Brassica rapa HOM05D006334 ORTHO05D008320 1.2e-71 274.2 307 92.8
Carub.0008s0614 Capsella rubella HOM05D006334 ORTHO05D008320 2.0e-71 273.5 306 86.9
BcaC06g32710 Brassica carinata HOM05D006334 ORTHO05D008320 2.6e-71 273.1 306 92.8
C07p54970 Brassica napus HOM05D006334 ORTHO05D008320 2.6e-71 273.1 306 92.8
THA.LOC104812531 Tarenaya hassleriana HOM05D006334 ORTHO05D008320 1.3e-67 260.8 299 76.6
Manes.03G123900 Manihot esculenta HOM05D006334 ORTHO05D008320 6.8e-64 248.4 303 70.3
Ciclev10009059m.g Citrus clementina HOM05D006334 ORTHO05D008320 1.4e-61 240.7 303 74.6
Prupe.4G205200 Prunus persica HOM05D006334 ORTHO05D008320 1.9e-61 240.4 303 69.3
Thecc.07G050800 Theobroma cacao HOM05D006334 ORTHO05D008320 5.4e-61 238.8 305 78.4
Haze_09629 Corylus avellana HOM05D006334 ORTHO05D008320 1.6e-60 237.3 303 64.4
COL.COLO4_09585 Corchorus olitorius HOM05D006334 ORTHO05D008320 2.7e-60 236.5 303 74.9
Atru.chr2.3229 Acer truncatum HOM05D006334 ORTHO05D008320 7.8e-60 235.0 304 63.8
FvH4_3g21950 Fragaria vesca HOM05D006334 ORTHO05D008320 1.7e-59 233.8 303 60.1
FAN11G3716 Fragaria x ananassa HOM05D006334 ORTHO05D008320 1.7e-59 233.8 303 61.4
RcHm_v2.0_Chr5g0037801 Rosa chinensis HOM05D006334 ORTHO05D008320 2.3e-59 233.4 303 59.4
Potri.001G418900 Populus trichocarpa HOM05D006334 ORTHO05D008320 3.0e-59 233.0 305 51.8
Gorai.002G083500 Gossypium raimondii HOM05D006334 ORTHO05D008320 3.9e-59 232.6 303 75.2
Dinv22296 Davidia involucrata HOM05D006334 ORTHO05D008320 5.1e-59 232.3 303 58.7
Gohir.D01G062800 Gossypium hirsutum HOM05D006334 ORTHO05D008320 6.6e-59 231.9 303 73.6
PGR031G1291 Punica granatum HOM05D006334 ORTHO05D008320 1.1e-58 231.1 142 85.9
AUR62015668 Chenopodium quinoa HOM05D006334 ORTHO05D008320 1.9e-58 230.3 298 53.0
Eucgr.F03434 Eucalyptus grandis HOM05D006334 ORTHO05D008320 1.9e-58 230.3 142 83.8
Gohir.A01G075500 Gossypium hirsutum HOM05D006334 ORTHO05D008320 1.9e-58 230.3 303 73.9
MD03G1210000 Malus domestica HOM05D006334 ORTHO05D008320 3.3e-58 229.6 303 59.7
arahy.Tifrunner.gnm1.ann1.Q0MPW2 Arachis hypogaea HOM05D006334 ORTHO05D008320 4.3e-58 229.2 302 68.2
Duzib268G1565 Durio zibethinus HOM05D006334 ORTHO05D008320 5.6e-58 228.8 302 74.5
CiPaw.12G127100 Carya illinoinensis HOM05D006334 ORTHO05D008320 7.3e-58 228.4 303 65.7
Lj3g0002745 Lotus japonicus HOM05D006334 ORTHO05D008320 7.3e-58 228.4 141 83.7
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 1.2e-57 227.6 300 56.0
QL08p012752 Quercus lobata HOM05D006334 ORTHO05D008320 2.1e-57 226.9 141 83.7
QL08p012879 Quercus lobata HOM05D006334 ORTHO05D008320 2.1e-57 226.9 141 83.7
GSVIVG01001978001 Vitis vinifera HOM05D006334 ORTHO05D008320 2.8e-57 226.5 142 81.7
MD11G1224700 Malus domestica HOM05D006334 ORTHO05D008320 3.6e-57 226.1 303 66.3
Medtr2g083200 Medicago truncatula HOM05D006334 ORTHO05D008320 3.6e-57 226.1 141 83.0
Nn1g07058 Nelumbo nucifera HOM05D006334 ORTHO05D008320 3.6e-57 226.1 142 84.5
arahy.Tifrunner.gnm1.ann1.9AY9GA Arachis hypogaea HOM05D006334 ORTHO05D008320 4.7e-57 225.7 302 67.5
CsaV3_3G023200 Cucumis sativus L. HOM05D006334 ORTHO05D008320 4.7e-57 225.7 303 73.6
CsaV3_UNG104770 Cucumis sativus L. HOM05D006334 ORTHO05D008320 4.7e-57 225.7 303 73.6
FAN25G1013 Fragaria x ananassa HOM05D006334 ORTHO05D008320 4.7e-57 225.7 303 63.4
AUR62020535 Chenopodium quinoa HOM05D006334 ORTHO05D008320 6.2e-57 225.3 298 55.7
Sabra16G0284400 Salix brachista HOM05D006334 ORTHO05D008320 6.2e-57 225.3 304 61.5
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 1.1e-56 224.6 140 82.9
CAN.G1110.6 Capsicum annuum HOM05D006334 ORTHO05D008320 1.4e-56 224.2 302 71.2
MELO3C018091.2 Cucumis melo HOM05D006334 ORTHO05D008320 3.1e-56 223.0 303 73.3
Hund23297 Selenicereus undatus HOM05D006334 ORTHO05D008320 3.1e-56 223.0 298 64.4
Lalb_Chr24g0400251 Lupinus albus HOM05D006334 ORTHO05D008320 4.0e-56 222.6 141 80.1
Ah.04g165560 Amaranthus hybridus HOM05D006334 ORTHO05D008320 5.2e-56 222.2 298 53.0
Glyma.12G213500 Glycine max HOM05D006334 ORTHO05D008320 5.2e-56 222.2 141 81.6
Phvul.005G092400 Phaseolus vulgaris HOM05D006334 ORTHO05D008320 5.2e-56 222.2 141 81.6
PGSC0003DMG400014399 Solanum tuberosum HOM05D006334 ORTHO05D008320 6.8e-56 221.9 301 78.7
Ca_01740_v3 Cicer arietinum L. HOM05D006334 ORTHO05D008320 8.9e-56 221.5 141 80.9
ClCG05G014700 Citrullus lanatus HOM05D006334 ORTHO05D008320 1.2e-55 221.1 303 64.7
Lj8A166G85 Lonicera japonica HOM05D006334 ORTHO05D008320 1.2e-55 221.1 142 81.0
Psat5g251960 Pisum sativum HOM05D006334 ORTHO05D008320 1.2e-55 221.1 141 80.9
vmacro09744 Vaccinium macrocarpon HOM05D006334 ORTHO05D008320 1.2e-55 221.1 301 71.4
Glyma.13G288200 Glycine max HOM05D006334 ORTHO05D008320 1.5e-55 220.7 141 80.9
AUR62005409 Chenopodium quinoa HOM05D006334 ORTHO05D008320 2.6e-55 219.9 292 61.6
Peaxi162Scf00407g00312 Petunia axillaris HOM05D006334 ORTHO05D008320 2.6e-55 219.9 303 70.3
Sc07g0002760 Simmondsia chinensis HOM05D006334 ORTHO05D008320 2.6e-55 219.9 137 81.0
Lsat_1_v5_gn_7_109541 Lactuca sativa HOM05D006334 ORTHO05D008320 3.4e-55 219.5 303 63.7
TPR.G19971 Trifolium pratense HOM05D006334 ORTHO05D008320 3.4e-55 219.5 141 80.1
CSS0039549 Camellia sinensis var. sinensis HOM05D006334 ORTHO05D008320 5.8e-55 218.8 142 78.9
Solyc10g006460.3 Solanum lycopersicum HOM05D006334 ORTHO05D008320 5.8e-55 218.8 140 80.7
TWI38G1766 Tripterygium wilfordii HOM05D006334 ORTHO05D008320 5.8e-55 218.8 304 63.8
Sopen10g002410 Solanum pennellii HOM05D006334 ORTHO05D008320 9.9e-55 218.0 140 80.7
ECA236G0521 Erigeron canadensis HOM05D006334 ORTHO05D008320 1.3e-54 217.6 301 64.8
VMungo1080G0184 Vigna mungo HOM05D006334 ORTHO05D008320 1.3e-54 217.6 141 79.4
Nitab4.5_0002229g0170 Nicotiana tabacum HOM05D006334 ORTHO05D008320 1.7e-54 217.2 302 68.9
Nitab4.5_0002342g0070 Nicotiana tabacum HOM05D006334 ORTHO05D008320 1.7e-54 217.2 303 69.0
MBI02_g23962_MAGBIO Magnolia biondii HOM05D006334 ORTHO05D008320 2.9e-54 216.5 142 79.6
SGA_v2.0_scaffold101G29789 Striga asiatica HOM05D006334 ORTHO05D008320 2.9e-54 216.5 143 78.3
TAR629G3436 Trochodendron aralioides HOM05D006334 ORTHO05D008320 2.9e-54 216.5 303 77.6
Aqoxy1G03666 Aquilegia oxysepala HOM05D006334 ORTHO05D008320 3.7e-54 216.1 142 78.9
HanXRQChr11g0337741 Helianthus annuus HOM05D006334 ORTHO05D008320 6.4e-54 215.3 293 64.5
Cc05_g13330 Coffea canephora HOM05D006334 ORTHO05D008320 8.4e-54 214.9 305 71.5
MSTRG.27096 Avicennia marina HOM05D006334 ORTHO05D008320 4.1e-53 212.6 141 75.2
Sed0009538 Sechium edule HOM05D006334 ORTHO05D008320 4.1e-53 212.6 303 81.2
Migut.M01801 Erythranthe guttata HOM05D006334 ORTHO05D008320 5.4e-53 212.2 305 74.8
PSO210G7302 Papaver somniferum HOM05D006334 ORTHO05D008320 2.7e-52 209.9 142 78.9
DCAR_022532 Daucus carota HOM05D006334 ORTHO05D008320 3.5e-52 209.5 305 54.1
PSO832G3755 Papaver somniferum HOM05D006334 ORTHO05D008320 7.8e-52 208.4 142 78.2
CDE05G3377 Ceratophyllum demersum HOM05D006334 ORTHO05D008320 6.6e-51 205.3 138 73.2
RhsimUnG0252800 Rhododendron simsii HOM05D006334 ORTHO05D008320 4.3e-50 202.6 174 64.9
HPP92_014117 Vanilla planifolia HOM05D006334 ORTHO05D008320 9.6e-50 201.4 135 76.3
Peaxi162Scf00450g00858 Petunia axillaris HOM05D006334 ORTHO05D008320 1.2e-49 201.1 317 68.8
Zm00001eb298180 Zea mays HOM05D006334 ORTHO05D008320 1.4e-48 197.6 131 75.6
unitig_748.g7233 Utricularia gibba HOM05D006334 ORTHO05D008320 8.9e-48 194.9 140 75.7
Os07g0103200 Oryza sativa ssp. japonica HOM05D006334 ORTHO05D008320 1.2e-47 194.5 125 78.4
EL10Ac4g07940 Beta vulgaris HOM05D006334 ORTHO05D008320 2.2e-46 190.3 311 61.7
Pp3c20_19360 Physcomitrium patens HOM05D006334 ORTHO05D008320 3.2e-45 186.4 134 70.1
SMO143G0307 Selaginella moellendorffii HOM05D006334 ORTHO05D008320 2.1e-44 183.7 125 72.8
SEGI_34639 Sequoiadendron giganteum HOM05D006334 ORTHO05D008320 7.8e-44 181.8 133 72.2
Mapoly0114s0022 Marchantia polymorpha HOM05D006334 ORTHO05D008320 1.7e-43 180.6 123 74.0
Actinidia35324 Actinidia chinensis HOM05D006334 ORTHO05D008320 3.9e-43 179.5 104 85.6
FAN21G3458 Fragaria x ananassa HOM05D006334 ORTHO05D008320 7.3e-42 175.3 313 55.9
Actinidia10714 Actinidia chinensis HOM05D006334 ORTHO05D008320 1.3e-41 174.5 106 84.9
AagrBONN_evm.TU.Sc2ySwM_228.581 Anthoceros agrestis HOM05D006334 ORTHO05D008320 6.9e-40 168.7 143 61.5
BcaC09g50615 Brassica carinata HOM05D006334 ORTHO05D008320 2.0e-39 167.2 220 96.4
AagrBONN_evm.TU.Sc2ySwM_368.826 Anthoceros agrestis HOM05D006334 ORTHO05D008320 2.6e-39 166.8 119 66.4
CBR_g8852 Chara braunii HOM05D006334 ORTHO05D008320 3.9e-35 152.9 123 61.0
Cre02.g101100 Chlamydomonas reinhardtii HOM05D006334 ORTHO05D008320 5.5e-29 132.5 120 55.8
Oeu032444.1 Olea europaea HOM05D006334 ORTHO05D008320 1.1e-24 118.2 76 76.3
FAN16G1435 Fragaria x ananassa HOM05D006334 ORTHO05D008320 3.8e-22 109.8 72 80.6
Cpa.g.sc97.53 Carica papaya HOM05D006334 ORTHO05D008320 4.9e-22 109.4 72 80.6
Haze_27349 Corylus avellana HOM05D006334 ORTHO05D008320 6.0e-20 102.4 120 41.7
Cpa.g.sc97.55 Carica papaya HOM05D006334 ORTHO05D008320 5.7e-18 95.9 59 81.4
ATR0697G296 Amborella trichopoda HOM05D006334 ORTHO05D008320 5.3e-16 89.4 64 70.3
FAN16G3226 Fragaria x ananassa HOM05D006334 ORTHO05D008320 3.0e-11 73.6 201 54.2
Actinidia10713 Actinidia chinensis HOM05D006334 ORTHO05D030819 3.8e-06 56.6 53 58.5


User provided reference genes

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