Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02985 Brassica carinata HOM05D003946 ORTHO05D004485 4.1e-43 177.9 110 100.0
Sp7g28360 Schrenkiella parvula HOM05D003946 ORTHO05D004485 5.2e-14 81.3 253 31.2
Thhalv10025952m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 6.9e-14 80.9 248 30.6
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 1.2e-13 80.1 53 73.6
C01p08570 Brassica napus HOM05D003946 ORTHO05D004485 1.2e-13 80.1 63 66.7
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 1.2e-13 80.1 53 73.6
CARHR238370 Cardamine hirsuta HOM05D003946 ORTHO05D004485 1.2e-13 80.1 53 73.6
THA.LOC104803531 Tarenaya hassleriana HOM05D003946 ORTHO05D004485 4.4e-13 78.2 45 77.8
A04p18280 Brassica napus HOM05D003946 ORTHO05D004485 5.8e-13 77.8 63 63.5
BraA04t17439Z Brassica rapa HOM05D003946 ORTHO05D004485 5.8e-13 77.8 63 63.5
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 7.6e-13 77.4 45 77.8
Thhalv10000290m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 7.6e-13 77.4 53 69.8
BcaC02g08518 Brassica carinata HOM05D003946 ORTHO05D004485 9.9e-13 77.0 53 69.8
A01p07700 Brassica napus HOM05D003946 ORTHO05D004485 9.9e-13 77.0 63 65.1
C04p53510 Brassica napus HOM05D003946 ORTHO05D004485 9.9e-13 77.0 53 69.8
BraA01t00713Z Brassica rapa HOM05D003946 ORTHO05D004485 9.9e-13 77.0 63 65.1
EL10Ac8g18885 Beta vulgaris HOM05D003946 ORTHO05D004485 1.3e-12 76.6 53 71.7
C07p57950 Brassica napus HOM05D003946 ORTHO05D004485 1.3e-12 76.6 53 67.9
BolC7t46253H Brassica oleracea HOM05D003946 ORTHO05D004485 1.3e-12 76.6 53 67.9
AL4G13950 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 1.7e-12 76.3 53 69.8
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 1.7e-12 76.3 53 67.9
Cfa012892 Carpinus fangiana HOM05D003946 ORTHO05D004485 1.7e-12 76.3 53 69.8
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.7e-12 76.3 53 67.9
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 1.7e-12 76.3 53 67.9
SalBow6G3589 Salvia bowleyana HOM05D003946 ORTHO05D004485 1.7e-12 76.3 53 71.7
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 2.2e-12 75.9 63 61.9
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 2.2e-12 75.9 53 67.9
MD04G1009600 Malus domestica HOM05D003946 ORTHO05D004485 2.9e-12 75.5 53 69.8
Ah.09g228630 Amaranthus hybridus HOM05D003946 ORTHO05D004485 3.8e-12 75.1 53 69.8
Ah.14g084270 Amaranthus hybridus HOM05D003946 ORTHO05D004485 3.8e-12 75.1 53 69.8
AUR62028392 Chenopodium quinoa HOM05D003946 ORTHO05D004485 3.8e-12 75.1 53 69.8
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 3.8e-12 75.1 63 61.9
Sp4g02820 Schrenkiella parvula HOM05D003946 ORTHO05D004485 3.8e-12 75.1 53 66.0
Thecc.09G157800 Theobroma cacao HOM05D003946 ORTHO05D004485 4.9e-12 74.7 53 69.8
Cpa.g.sc37.157 Carica papaya HOM05D003946 ORTHO05D004485 6.4e-12 74.3 45 75.6
Duzib187G0180 Durio zibethinus HOM05D003946 ORTHO05D004485 6.4e-12 74.3 53 67.9
Duzib187G0394 Durio zibethinus HOM05D003946 ORTHO05D004485 6.4e-12 74.3 53 67.9
Eucgr.C00110 Eucalyptus grandis HOM05D003946 ORTHO05D004485 6.4e-12 74.3 53 67.9
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 6.4e-12 74.3 53 67.9
Atru.chr7.424 Acer truncatum HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 66.0
CiPaw.10G166500 Carya illinoinensis HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 67.9
HanXRQChr03g0065991 Helianthus annuus HOM05D003946 ORTHO05D004485 8.4e-12 73.9 45 77.8
HanXRQChr09g0244711 Helianthus annuus HOM05D003946 ORTHO05D004485 8.4e-12 73.9 45 77.8
Nitab4.5_0002545g0010 Nicotiana tabacum HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 69.8
Nitab4.5_0003269g0040 Nicotiana tabacum HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 69.8
Peaxi162Scf00038g00222 Petunia axillaris HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 69.8
Prupe.8G039000 Prunus persica HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 67.9
SGA_v2.0_scaffold293G47418 Striga asiatica HOM05D003946 ORTHO05D004485 8.4e-12 73.9 53 69.8
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 8.4e-12 73.9 63 60.3
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.1e-11 73.6 53 66.0
Aqoxy3G01561 Aquilegia oxysepala HOM05D003946 ORTHO05D004485 1.4e-11 73.2 63 61.9
CAN.G363.9 Capsicum annuum HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 67.9
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.4e-11 73.2 63 61.9
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.4e-11 73.2 63 61.9
Cc06_g14380 Coffea canephora HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 67.9
Haze_21259 Corylus avellana HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 66.0
Glyma.13G354200 Glycine max HOM05D003946 ORTHO05D004485 1.4e-11 73.2 62 58.1
Gohir.A05G007100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 64.2
Gohir.D05G008000 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 64.2
Os10g0486900 Oryza sativa ssp. japonica HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 66.0
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.4e-11 73.2 53 66.0
QL02p094618 Quercus lobata HOM05D003946 ORTHO05D004485 1.4e-11 73.2 51 66.7
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 1.9e-11 72.8 45 75.6
MD16G1260600 Malus domestica HOM05D003946 ORTHO05D004485 1.9e-11 72.8 53 66.0
Peaxi162Scf00038g00224 Petunia axillaris HOM05D003946 ORTHO05D004485 1.9e-11 72.8 53 67.9
SEGI_31472 Sequoiadendron giganteum HOM05D003946 ORTHO05D004485 1.9e-11 72.8 45 73.3
Sc18g0003220 Simmondsia chinensis HOM05D003946 ORTHO05D004485 1.9e-11 72.8 53 66.0
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 1.9e-11 72.8 53 66.0
unitig_62.g23482 Utricularia gibba HOM05D003946 ORTHO05D004485 1.9e-11 72.8 53 67.9
Zm00001eb060560 Zea mays HOM05D003946 ORTHO05D004485 1.9e-11 72.8 53 64.2
Ciclev10009155m.g Citrus clementina HOM05D003946 ORTHO05D004485 2.4e-11 72.4 53 66.0
Duzib150G0638 Durio zibethinus HOM05D003946 ORTHO05D004485 2.4e-11 72.4 63 60.3
Migut.K00288 Erythranthe guttata HOM05D003946 ORTHO05D004485 2.4e-11 72.4 53 67.9
FvH4_3g34740 Fragaria vesca HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
FAN11G0842 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
FAN15G3651 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
FAN16G0870 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
FAN25G1583 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 2.4e-11 72.4 53 66.0
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 2.4e-11 72.4 53 66.0
Sed0010600 Sechium edule HOM05D003946 ORTHO05D004485 2.4e-11 72.4 45 73.3
Actinidia18308 Actinidia chinensis HOM05D003946 ORTHO05D004485 3.2e-11 72.0 53 66.0
AUR62039767 Chenopodium quinoa HOM05D003946 ORTHO05D004485 3.2e-11 72.0 38 86.8
Gorai.009G008100 Gossypium raimondii HOM05D003946 ORTHO05D004485 3.2e-11 72.0 48 68.8
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 3.2e-11 72.0 53 64.2
Oeu024902.1 Olea europaea HOM05D003946 ORTHO05D004485 3.2e-11 72.0 53 67.9
Prupe.1G099700 Prunus persica HOM05D003946 ORTHO05D004485 3.2e-11 72.0 53 64.2
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 3.2e-11 72.0 53 66.0
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 3.2e-11 72.0 53 66.0
RcHm_v2.0_Chr4g0405181 Rosa chinensis HOM05D003946 ORTHO05D004485 3.2e-11 72.0 45 73.3
CAN.G1190.24 Capsicum annuum HOM05D003946 ORTHO05D004485 4.2e-11 71.6 53 67.9
MELO3C004108.2 Cucumis melo HOM05D003946 ORTHO05D004485 4.2e-11 71.6 63 58.7
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 4.2e-11 71.6 63 58.7
Lsat_1_v5_gn_5_88241 Lactuca sativa HOM05D003946 ORTHO05D004485 4.2e-11 71.6 44 72.7
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 4.2e-11 71.6 45 71.1
Nn8g40208 Nelumbo nucifera HOM05D003946 ORTHO05D004485 4.2e-11 71.6 53 64.2
Pp3c8_13040 Physcomitrium patens HOM05D003946 ORTHO05D004485 4.2e-11 71.6 42 71.4
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 4.2e-11 71.6 45 71.1
Potri.006G178900 Populus trichocarpa HOM05D003946 ORTHO05D004485 4.2e-11 71.6 63 58.7
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 4.2e-11 71.6 45 71.1
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 4.2e-11 71.6 45 71.1
Zm00001eb365370 Zea mays HOM05D003946 ORTHO05D004485 4.2e-11 71.6 53 64.2
Actinidia38658 Actinidia chinensis HOM05D003946 ORTHO05D004485 5.4e-11 71.2 53 66.0
COL.COLO4_10067 Corchorus olitorius HOM05D003946 ORTHO05D004485 5.4e-11 71.2 43 72.1
FAN27G0955 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.4e-11 71.2 63 58.7
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 5.4e-11 71.2 45 71.1
TWI63G1262 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 5.4e-11 71.2 53 64.2
ATR0763G121 Amborella trichopoda HOM05D003946 ORTHO05D004485 7.1e-11 70.9 38 84.2
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 62.3
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 62.3
Lsat_1_v5_gn_7_51160 Lactuca sativa HOM05D003946 ORTHO05D004485 7.1e-11 70.9 45 73.3
Rhsim03G0261300 Rhododendron simsii HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 62.3
SMO361G0476 Selaginella moellendorffii HOM05D003946 ORTHO05D004485 7.1e-11 70.9 51 64.7
Solyc07g006180.3 Solanum lycopersicum HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 66.0
Sopen07g002290 Solanum pennellii HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 66.0
PGSC0003DMG400011219 Solanum tuberosum HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 66.0
TWI34G0749 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 62.3
vmacro06046 Vaccinium macrocarpon HOM05D003946 ORTHO05D004485 7.1e-11 70.9 53 62.3
ClCG11G012680 Citrullus lanatus HOM05D003946 ORTHO05D004485 9.3e-11 70.5 63 57.1
Potri.018G100700 Populus trichocarpa HOM05D003946 ORTHO05D004485 9.3e-11 70.5 45 68.9
Sabra06G0135900 Salix brachista HOM05D003946 ORTHO05D004485 9.3e-11 70.5 63 55.6
Sed0007467 Sechium edule HOM05D003946 ORTHO05D004485 9.3e-11 70.5 45 68.9
GSVIVG01023716001 Vitis vinifera HOM05D003946 ORTHO05D004485 9.3e-11 70.5 54 59.3
Dinv42798 Davidia involucrata HOM05D003946 ORTHO05D004485 1.2e-10 70.1 45 71.1
Dinv43303 Davidia involucrata HOM05D003946 ORTHO05D004485 1.2e-10 70.1 45 71.1
Lj9A725T27 Lonicera japonica HOM05D003946 ORTHO05D004485 1.2e-10 70.1 53 64.2
Ciclev10010190m.g Citrus clementina HOM05D003946 ORTHO05D004485 1.6e-10 69.7 45 71.1
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.6e-10 69.7 45 68.9
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 1.6e-10 69.7 45 68.9
Dinv41322 Davidia involucrata HOM05D003946 ORTHO05D004485 2.1e-10 69.3 45 68.9
PSO063G3610 Papaver somniferum HOM05D003946 ORTHO05D004485 2.1e-10 69.3 53 64.2
Hma1.2p1_2732F.1_g327665 Hydrangea macrophylla HOM05D003946 ORTHO05D004485 3.5e-10 68.6 53 62.3
DCAR_014726 Daucus carota HOM05D003946 ORTHO05D004485 4.6e-10 68.2 51 62.7
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.0e-09 67.0 45 66.7
Mapoly0119s0026 Marchantia polymorpha HOM05D003946 ORTHO05D004485 1.7e-09 66.2 53 62.3
AT4G30480 Arabidopsis thaliana HOM05D003946 ORTHO05D004485 8.7e-09 63.9 64 57.8
CBR_g12383 Chara braunii HOM05D003946 ORTHO05D004485 1.5e-08 63.2 45 62.2
arahy.Tifrunner.gnm1.ann1.43EHF4 Arachis hypogaea HOM05D003946 ORTHO05D004485 1.3e-07 60.1 48 64.6
AagrBONN_evm.TU.Sc2ySwM_117.755 Anthoceros agrestis HOM05D003946 ORTHO05D004485 2.1e-07 59.3 32 84.4
Cre02.g075100 Chlamydomonas reinhardtii HOM05D003946 ORTHO05D004485 2.1e-07 59.3 38 65.8
Cc00_g22900 Coffea canephora HOM05D003946 ORTHO05D004485 6.2e-07 57.8 51 52.9
Cc00_g34860 Coffea canephora HOM05D003946 ORTHO05D004485 6.2e-07 57.8 51 52.9
PRCOL_00003553 Prasinoderma coloniale HOM05D003946 ORTHO05D004485 6.2e-07 57.8 68 44.1
HPP92_017289 Vanilla planifolia HOM05D003946 ORTHO05D004485 1.1e-06 57.0 44 59.1
BcaNung00558 Brassica carinata HOM05D003946 ORTHO05D004485 3.1e-06 55.5 46 56.5
MCO12G083 Micromonas commoda HOM05D003946 ORTHO05D004485 5.3e-06 54.7 59 50.8
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 9.0e-06 53.9 38 63.2


User provided reference genes

Program Settings