Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 9.2e-84 313.5 161 100.0
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 6.2e-64 247.7 161 80.7
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 6.2e-64 247.7 161 80.7
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 4.0e-63 245.0 161 80.1
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 1.2e-62 243.4 161 78.3
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.2e-62 243.4 161 78.9
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 3.4e-62 241.9 161 78.3
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 3.4e-62 241.9 161 78.3
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 3.4e-62 241.9 157 80.9
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 4.4e-62 241.5 161 78.3
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 9.9e-62 240.4 161 77.6
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 3.8e-61 238.4 157 79.6
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 1.6e-59 233.0 157 77.7
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.3e-58 229.9 161 73.3
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 1.7e-53 213.0 157 73.2
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 1.7e-53 213.0 157 73.2
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 1.9e-44 183.0 159 58.5
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 5.5e-44 181.4 159 56.0
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 5.5e-44 181.4 161 64.6
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 9.3e-44 180.6 160 55.6
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 5.1e-42 174.9 159 54.1
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 1.5e-41 173.3 159 54.1
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 1.8e-39 166.4 159 52.2
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 4.0e-39 165.2 159 50.9
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 4.0e-39 165.2 160 50.6
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 6.9e-39 164.5 158 51.9
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.2e-38 163.7 159 49.7
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 1.5e-38 163.3 159 48.4
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 2.0e-38 162.9 158 50.0
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 2.0e-38 162.9 159 52.8
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 3.4e-38 162.2 159 49.1
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 5.8e-38 161.4 158 50.0
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 1.0e-37 160.6 158 50.0
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 2.2e-37 159.5 157 52.9
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 4.9e-37 158.3 159 49.1
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 4.9e-37 158.3 157 47.8
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 6.5e-37 157.9 159 47.8
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 8.4e-37 157.5 154 50.6
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 1.1e-36 157.1 158 50.6
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 2.5e-36 156.0 156 51.3
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 3.2e-36 155.6 158 49.4
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 4.2e-36 155.2 156 51.9
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 5.5e-36 154.8 178 47.2
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 1.2e-35 153.7 158 49.4
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 1.6e-35 153.3 158 48.7
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 2.1e-35 152.9 159 45.9
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 2.1e-35 152.9 159 44.0
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 2.7e-35 152.5 158 48.1
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.7e-35 152.5 166 45.8
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 7.9e-35 151.0 160 46.9
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 7.9e-35 151.0 156 50.0
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 1.3e-34 150.2 95 82.1
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 1.3e-34 150.2 94 83.0
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 3.0e-34 149.1 158 47.5
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 3.0e-34 149.1 156 47.4
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 5.1e-34 148.3 157 47.8
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 5.1e-34 148.3 154 47.4
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.7e-34 147.9 159 44.7
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 6.7e-34 147.9 159 45.3
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 8.7e-34 147.5 159 46.5
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 1.9e-33 146.4 160 46.9
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 2.5e-33 146.0 159 45.9
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 2.5e-33 146.0 159 45.9
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 7.4e-33 144.4 94 79.8
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 7.4e-33 144.4 159 45.9
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 7.4e-33 144.4 159 45.3
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 9.7e-33 144.1 159 45.9
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 1.3e-32 143.7 160 43.8
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 1.3e-32 143.7 159 46.5
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 1.6e-32 143.3 156 50.0
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.3e-32 141.4 159 44.7
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 6.9e-31 137.9 159 45.3
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 6.9e-31 137.9 157 45.9
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 1.2e-30 137.1 155 44.5
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 4.5e-30 135.2 157 45.2
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 1.3e-29 133.7 129 52.7
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.7e-29 133.3 137 54.0
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 2.9e-29 132.5 157 40.8
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 2.9e-29 132.5 160 43.8
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 6.5e-29 131.3 156 40.4
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.1e-28 130.6 160 42.5
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.9e-28 129.8 157 44.6
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 2.5e-28 129.4 156 39.7
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 2.5e-28 129.4 158 39.9
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 2.5e-28 129.4 159 40.3
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 2.5e-28 129.4 159 40.9
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 3.2e-28 129.0 160 41.2
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 7.2e-28 127.9 160 41.2
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 4.6e-27 125.2 159 44.7
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 1.8e-26 123.2 160 34.4
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 2.3e-26 122.9 160 40.0
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 2.5e-25 119.4 154 40.3
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 2.5e-25 119.4 151 38.4
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 1.3e-24 117.1 139 42.4
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 2.2e-24 116.3 138 54.3
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 8.2e-24 114.4 128 55.5
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 8.2e-24 114.4 128 55.5
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 9.1e-23 110.9 84 64.3
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.5e-22 110.2 159 39.0
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.7e-21 106.7 133 42.1
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 2.2e-21 106.3 143 38.5
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 1.1e-20 104.0 130 42.3
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 4.2e-20 102.1 158 37.3
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 7.9e-19 97.8 134 35.8
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 1.8e-18 96.7 144 37.5
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 8.8e-18 94.4 152 34.9
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.5e-17 93.6 182 34.1
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 7.4e-17 91.3 60 73.3
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.7e-16 90.1 63 65.1
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 2.8e-16 89.4 127 37.0
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 4.8e-16 88.6 149 35.6
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 8.2e-16 87.8 86 43.0
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 1.4e-15 87.0 155 31.0
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 1.4e-15 87.0 90 45.6
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.5e-14 83.6 121 35.5
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 2.0e-14 83.2 94 46.8
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.7e-13 80.1 149 28.9
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 3.8e-13 79.0 61 59.0
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 1.9e-12 76.6 137 32.1
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 1.0e-10 70.9 74 43.2
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 1.1e-09 67.4 50 58.0
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 3.7e-08 62.4 153 26.8
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 4.8e-08 62.0 151 27.2
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 4.8e-08 62.0 151 27.2
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 6.3e-08 61.6 143 30.1
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 6.3e-08 61.6 151 27.8
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 6.3e-08 61.6 151 27.8
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 8.2e-08 61.2 137 29.2
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 8.2e-08 61.2 151 26.5
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.1e-07 60.8 153 29.4
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 1.4e-07 60.5 147 26.5
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 1.8e-07 60.1 151 27.8
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 1.8e-07 60.1 146 26.7
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 2.4e-07 59.7 146 30.1
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.4e-07 59.7 146 27.4
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 2.4e-07 59.7 146 27.4
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 2.4e-07 59.7 140 27.9
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 3.1e-07 59.3 137 30.7
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.1e-07 59.3 148 27.7
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 4.1e-07 58.9 151 25.8
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 5.3e-07 58.5 144 28.5
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 7.0e-07 58.2 145 28.3
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 7.0e-07 58.2 134 29.9
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 9.1e-07 57.8 136 27.9
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 9.1e-07 57.8 136 28.7
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 9.1e-07 57.8 148 27.0
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 1.2e-06 57.4 137 32.1
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 1.2e-06 57.4 153 29.4
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 1.2e-06 57.4 146 28.1
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.6e-06 57.0 143 28.0
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 1.6e-06 57.0 149 27.5
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 2.0e-06 56.6 150 26.7
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 2.0e-06 56.6 146 26.0
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 2.0e-06 56.6 151 27.2
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 2.0e-06 56.6 135 30.4
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 2.0e-06 56.6 137 27.0
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 2.0e-06 56.6 146 26.0
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 2.0e-06 56.6 153 26.1
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.6e-06 56.2 149 27.5
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 2.6e-06 56.2 143 28.7
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 2.6e-06 56.2 144 27.8
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 2.6e-06 56.2 153 27.5
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 2.6e-06 56.2 142 27.5
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.6e-06 56.2 136 28.7
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 2.6e-06 56.2 146 28.1
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 2.6e-06 56.2 149 27.5
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 3.5e-06 55.8 148 27.7
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 3.5e-06 55.8 136 27.2
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 3.5e-06 55.8 145 27.6
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 3.5e-06 55.8 142 26.8
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 3.5e-06 55.8 145 28.3
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 3.5e-06 55.8 137 27.7
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 3.5e-06 55.8 142 27.5
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 4.5e-06 55.5 159 28.3
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 4.5e-06 55.5 151 25.2
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 4.5e-06 55.5 143 27.3
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 5.9e-06 55.1 145 27.6
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 5.9e-06 55.1 149 27.5
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 5.9e-06 55.1 143 27.3
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 5.9e-06 55.1 154 25.3
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 5.9e-06 55.1 137 28.5
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 7.7e-06 54.7 146 26.0
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 7.7e-06 54.7 152 28.3
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 7.7e-06 54.7 152 25.0


User provided reference genes

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