Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02875 Brassica carinata HOM05D003543 ORTHO05D004112 4.0e-33 146.0 253 100.0
AL7G38470 Arabidopsis lyrata HOM05D003543 ORTHO05D004112 1.2e-24 117.9 250 89.6
Sp7g15040 Schrenkiella parvula HOM05D003543 ORTHO05D004112 1.2e-24 117.9 250 90.0
BolC7t45317H Brassica oleracea HOM05D003543 ORTHO05D004112 2.0e-24 117.1 250 94.8
Thhalv10025098m.g Eutrema salsugineum HOM05D003543 ORTHO05D004112 4.4e-24 115.9 250 90.0
AT4G16490 Arabidopsis thaliana HOM05D003543 ORTHO05D004112 5.8e-24 115.5 250 89.2
C07p47940 Brassica napus HOM05D003543 ORTHO05D004112 5.8e-24 115.5 250 94.4
BcaC06g33483 Brassica carinata HOM05D003543 ORTHO05D004112 7.5e-24 115.2 250 58.0
BraA03t14083Z Brassica rapa HOM05D003543 ORTHO05D004112 1.3e-23 114.4 248 95.6
Carub.0007s2501 Capsella rubella HOM05D003543 ORTHO05D004112 1.7e-23 114.0 250 87.6
BcaC09g50355 Brassica carinata HOM05D003543 ORTHO05D004112 4.9e-23 112.5 248 89.5
A01p21010 Brassica napus HOM05D003543 ORTHO05D004112 4.9e-23 112.5 248 89.5
C01p26290 Brassica napus HOM05D003543 ORTHO05D004112 4.9e-23 112.5 248 89.5
BolC1t02576H Brassica oleracea HOM05D003543 ORTHO05D004112 4.9e-23 112.5 248 89.5
BraA01t02016Z Brassica rapa HOM05D003543 ORTHO05D004112 4.9e-23 112.5 248 89.5
CARHR222890 Cardamine hirsuta HOM05D003543 ORTHO05D004112 4.9e-23 112.5 250 88.0
BcaNung00189 Brassica carinata HOM05D003543 ORTHO05D004112 8.3e-23 111.7 248 88.3
A03p49880 Brassica napus HOM05D003543 ORTHO05D004112 4.6e-21 105.9 248 94.4
Aa31LG2G12560 Aethionema arabicum HOM05D003543 ORTHO05D004112 7.3e-19 98.6 246 87.0
Aa31LG9G12240 Aethionema arabicum HOM05D003543 ORTHO05D004112 2.8e-18 96.7 250 86.4
THA.LOC104815484 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 6.8e-17 92.0 57 78.9
Cfa000083 Carpinus fangiana HOM05D003543 ORTHO05D004112 2.6e-16 90.1 58 77.6
Haze_06957 Corylus avellana HOM05D003543 ORTHO05D004112 2.6e-16 90.1 58 77.6
QL05p069094 Quercus lobata HOM05D003543 ORTHO05D004112 1.3e-15 87.8 249 81.9
THA.LOC104813330 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 1.3e-15 87.8 59 76.3
CiPaw.09G104000 Carya illinoinensis HOM05D003543 ORTHO05D004112 4.1e-14 82.8 58 75.9
Cc09_g00700 Coffea canephora HOM05D003543 ORTHO05D004112 4.1e-14 82.8 58 72.4
Solyc04g014810.3 Solanum lycopersicum HOM05D003543 ORTHO05D004112 7.1e-14 82.0 250 79.2
GSVIVG01006098001 Vitis vinifera HOM05D003543 ORTHO05D004112 9.2e-14 81.6 58 72.4
Potri.006G015100 Populus trichocarpa HOM05D003543 ORTHO05D004112 1.6e-13 80.9 60 73.3
Nn1g03263 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.1e-13 80.5 249 80.7
Oeu030109.1 Olea europaea HOM05D003543 ORTHO05D004112 4.6e-13 79.3 58 70.7
PGSC0003DMG400013286 Solanum tuberosum HOM05D003543 ORTHO05D004112 4.6e-13 79.3 58 70.7
CANSAT56G0448 Cannabis sativa HOM05D003543 ORTHO05D004112 2.3e-12 77.0 252 81.7
Migut.H01613 Erythranthe guttata HOM05D003543 ORTHO05D004112 2.3e-12 77.0 58 69.0
Oeu022953.1 Olea europaea HOM05D003543 ORTHO05D004112 2.3e-12 77.0 58 67.2
Sc05g0009680 Simmondsia chinensis HOM05D003543 ORTHO05D004112 2.3e-12 77.0 58 69.0
Sopen04g006940 Solanum pennellii HOM05D003543 ORTHO05D004112 2.3e-12 77.0 250 79.6
EL10Ac8g20219 Beta vulgaris HOM05D003543 ORTHO05D004112 3.0e-12 76.6 60 70.0
Prupe.4G008500 Prunus persica HOM05D003543 ORTHO05D004112 3.0e-12 76.6 56 69.6
Nitab4.5_0000143g0100 Nicotiana tabacum HOM05D003543 ORTHO05D004112 5.1e-12 75.9 66 62.1
Migut.M01414 Erythranthe guttata HOM05D003543 ORTHO05D004112 6.6e-12 75.5 56 69.6
MD05G1359600 Malus domestica HOM05D003543 ORTHO05D004112 8.7e-12 75.1 56 66.1
SGA_v2.0_scaffold7G03732 Striga asiatica HOM05D003543 ORTHO05D004112 1.5e-11 74.3 58 65.5
BcaNung02874 Brassica carinata HOM05D003543 ORTHO05D004112 1.9e-11 73.9 38 92.1
Lalb_Chr20g0119331 Lupinus albus HOM05D003543 ORTHO05D004112 1.9e-11 73.9 56 66.1
Hund23399 Selenicereus undatus HOM05D003543 ORTHO05D004112 1.9e-11 73.9 251 60.2
Ah.09g234170 Amaranthus hybridus HOM05D003543 ORTHO05D004112 3.3e-11 73.2 59 67.8
MSTRG.7156 Avicennia marina HOM05D003543 ORTHO05D004112 5.6e-11 72.4 56 67.9
AUR62021839 Chenopodium quinoa HOM05D003543 ORTHO05D004112 5.6e-11 72.4 60 68.3
Lalb_Chr18g0057071 Lupinus albus HOM05D003543 ORTHO05D004112 5.6e-11 72.4 56 66.1
AUR62012814 Chenopodium quinoa HOM05D003543 ORTHO05D004112 7.3e-11 72.0 61 67.2
ECA234G1693 Erigeron canadensis HOM05D003543 ORTHO05D004112 7.3e-11 72.0 54 68.5
Nitab4.5_0004646g0090 Nicotiana tabacum HOM05D003543 ORTHO05D004112 1.2e-10 71.2 39 79.5
PSO781G0286 Papaver somniferum HOM05D003543 ORTHO05D004112 1.6e-10 70.9 55 65.5
Oeu047063.1 Olea europaea HOM05D003543 ORTHO05D004112 2.1e-10 70.5 57 63.2
PSO541G0019 Papaver somniferum HOM05D003543 ORTHO05D004112 2.1e-10 70.5 55 65.5
CDE05G3523 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 2.8e-10 70.1 58 67.2
Nn1g07428 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.8e-10 70.1 37 86.5
arahy.Tifrunner.gnm1.ann1.09PW0C Arachis hypogaea HOM05D003543 ORTHO05D004112 3.6e-10 69.7 56 67.9
arahy.Tifrunner.gnm1.ann1.ZLF8NQ Arachis hypogaea HOM05D003543 ORTHO05D004112 3.6e-10 69.7 56 67.9
Glyma.07G266400 Glycine max HOM05D003543 ORTHO05D004112 4.7e-10 69.3 58 67.2
HanXRQChr16g0517001 Helianthus annuus HOM05D003543 ORTHO05D004112 4.7e-10 69.3 51 70.6
Cpa.g.sc75.99 Carica papaya HOM05D003543 ORTHO05D004112 8.1e-10 68.6 34 91.2
Glyma.17G007900 Glycine max HOM05D003543 ORTHO05D004112 8.1e-10 68.6 58 65.5
HanXRQChr17g0559481 Helianthus annuus HOM05D003543 ORTHO05D004112 8.1e-10 68.6 54 66.7
Lj2A260T84 Lonicera japonica HOM05D003543 ORTHO05D004112 8.1e-10 68.6 34 88.2
TAR626G1558 Trochodendron aralioides HOM05D003543 ORTHO05D004112 8.1e-10 68.6 34 91.2
HPP92_006094 Vanilla planifolia HOM05D003543 ORTHO05D004112 8.1e-10 68.6 51 70.6
Lsat_1_v5_gn_4_63420 Lactuca sativa HOM05D003543 ORTHO05D004112 1.1e-09 68.2 55 69.1
TWI63G1747 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 1.1e-09 68.2 35 88.6
Aa31sc262G30 Aethionema arabicum HOM05D003543 ORTHO05D004112 1.4e-09 67.8 39 74.4
QL05p068721 Quercus lobata HOM05D003543 ORTHO05D004112 1.4e-09 67.8 35 85.7
Hma1.2p1_0657F.1_g197030 Hydrangea macrophylla HOM05D003543 ORTHO05D004112 2.4e-09 67.0 34 85.3
Peaxi162Scf00520g00221 Petunia axillaris HOM05D003543 ORTHO05D004112 2.4e-09 67.0 40 80.0
PGR004G1420 Punica granatum HOM05D003543 ORTHO05D004112 2.4e-09 67.0 34 85.3
CDE02G1583 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 3.1e-09 66.6 58 63.8
Sed0014537 Sechium edule HOM05D003543 ORTHO05D004112 3.1e-09 66.6 38 76.3
SGA_v2.0_scaffold7G03734 Striga asiatica HOM05D003543 ORTHO05D004112 4.0e-09 66.2 40 72.5
Dinv05019 Davidia involucrata HOM05D003543 ORTHO05D004112 5.2e-09 65.9 33 87.9
FvH4_3g00770 Fragaria vesca HOM05D003543 ORTHO05D004112 5.2e-09 65.9 33 87.9
FAN21G0242 Fragaria x ananassa HOM05D003543 ORTHO05D004112 5.2e-09 65.9 33 87.9
FAN25G1985 Fragaria x ananassa HOM05D003543 ORTHO05D004112 5.2e-09 65.9 33 87.9
Os07g0584900 Oryza sativa ssp. japonica HOM05D003543 ORTHO05D004112 5.2e-09 65.9 52 67.3
RcHm_v2.0_Chr5g0001011 Rosa chinensis HOM05D003543 ORTHO05D004112 5.2e-09 65.9 33 87.9
Actinidia02307 Actinidia chinensis HOM05D003543 ORTHO05D004112 6.9e-09 65.5 33 87.9
CSS0010074 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 6.9e-09 65.5 34 82.4
CSS0034148 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 6.9e-09 65.5 34 82.4
COL.COLO4_31904 Corchorus olitorius HOM05D003543 ORTHO05D004112 9.0e-09 65.1 37 83.8
Phvul.006G142100 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 9.0e-09 65.1 34 79.4
Zm00001eb325810 Zea mays HOM05D030178 ORTHO05D004112 9.0e-09 65.1 50 68.0
Atru.chr1.2368 Acer truncatum HOM05D003543 ORTHO05D004112 1.2e-08 64.7 33 84.8
Aqoxy4G02200 Aquilegia oxysepala HOM05D003543 ORTHO05D004112 1.2e-08 64.7 33 87.9
SGA_v2.0_scaffold89G27513 Striga asiatica HOM05D003543 ORTHO05D004112 1.2e-08 64.7 56 58.9
Eucgr.D01428 Eucalyptus grandis HOM05D003543 ORTHO05D004112 1.5e-08 64.3 34 88.2
MD10G1335100 Malus domestica HOM05D003543 ORTHO05D004112 1.5e-08 64.3 33 84.8
MD11G1170200 Malus domestica HOM05D003543 ORTHO05D004112 1.5e-08 64.3 35 80.0
Nitab4.5_0003626g0080 Nicotiana tabacum HOM05D003543 ORTHO05D004112 1.5e-08 64.3 33 87.9
Solyc11g012440.1 Solanum lycopersicum HOM05D003543 ORTHO05D004112 1.5e-08 64.3 33 87.9
Sopen11g007180 Solanum pennellii HOM05D003543 ORTHO05D004112 1.5e-08 64.3 33 87.9
CAN.G696.20 Capsicum annuum HOM05D003543 ORTHO05D004112 2.0e-08 63.9 33 87.9
Glyma.09G011300 Glycine max HOM05D003543 ORTHO05D004112 2.0e-08 63.9 33 81.8
Lj6g0020811 Lotus japonicus HOM05D003543 ORTHO05D004112 2.0e-08 63.9 34 79.4
VMungo0540G1194 Vigna mungo HOM05D003543 ORTHO05D004112 2.0e-08 63.9 33 81.8
Medtr2g026130 Medicago truncatula HOM05D003543 ORTHO05D004112 2.6e-08 63.5 33 81.8
Ca_00736_v3 Cicer arietinum L. HOM05D003543 ORTHO05D004112 3.4e-08 63.2 33 81.8
Ciclev10018015m.g Citrus clementina HOM05D003543 ORTHO05D004112 3.4e-08 63.2 33 78.8
Gorai.010G188000 Gossypium raimondii HOM05D003543 ORTHO05D004112 3.4e-08 63.2 36 83.3
Lsat_1_v5_gn_7_13800 Lactuca sativa HOM05D003543 ORTHO05D004112 3.4e-08 63.2 33 90.9
Lsat_1_v5_gn_9_117501 Lactuca sativa HOM05D003543 ORTHO05D004112 3.4e-08 63.2 33 90.9
Manes.08G070984 Manihot esculenta HOM05D003543 ORTHO05D004112 3.4e-08 63.2 34 85.3
TPR.G10581 Trifolium pratense HOM05D003543 ORTHO05D004112 3.4e-08 63.2 37 75.7
ATR0712G168 Amborella trichopoda HOM05D003543 ORTHO05D004112 4.4e-08 62.8 51 66.7
Dinv32066 Davidia involucrata HOM05D003543 ORTHO05D004112 4.4e-08 62.8 34 82.4
Psat1g174720 Pisum sativum HOM05D003543 ORTHO05D004112 4.4e-08 62.8 33 81.8
Rhsim13G0144100 Rhododendron simsii HOM05D003543 ORTHO05D004112 4.4e-08 62.8 33 84.8
SalBow8G1766 Salvia bowleyana HOM05D003543 ORTHO05D004112 4.4e-08 62.8 35 82.9
TWI38G1278 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 4.4e-08 62.8 34 82.4
Duzib192G0760 Durio zibethinus HOM05D003543 ORTHO05D004112 5.8e-08 62.4 36 83.3
Glyma.15G115800 Glycine max HOM05D003543 ORTHO05D004112 5.8e-08 62.4 33 81.8
PGSC0003DMG400023602 Solanum tuberosum HOM05D003543 ORTHO05D004112 5.8e-08 62.4 35 82.9
Thecc.06G235100 Theobroma cacao HOM05D003543 ORTHO05D004112 5.8e-08 62.4 36 83.3
VMungo1215G1690 Vigna mungo HOM05D003543 ORTHO05D004112 5.8e-08 62.4 34 79.4
Peaxi162Scf00352g00096 Petunia axillaris HOM05D003543 ORTHO05D004112 7.6e-08 62.0 33 84.8
Potri.016G010800 Populus trichocarpa HOM05D003543 ORTHO05D004112 7.6e-08 62.0 36 77.8
PGR042G2126 Punica granatum HOM05D003543 ORTHO05D004112 7.6e-08 62.0 35 82.9
Sabra06G0010600 Salix brachista HOM05D003543 ORTHO05D004112 7.6e-08 62.0 36 77.8
Sabra16G0014300 Salix brachista HOM05D003543 ORTHO05D004112 7.6e-08 62.0 36 77.8
Actinidia04652 Actinidia chinensis HOM05D003543 ORTHO05D004112 9.9e-08 61.6 33 84.8
ClCG01G021420 Citrullus lanatus HOM05D003543 ORTHO05D004112 9.9e-08 61.6 33 84.8
MELO3C007441.2 Cucumis melo HOM05D003543 ORTHO05D004112 9.9e-08 61.6 33 84.8
CsaV3_6G048440 Cucumis sativus L. HOM05D003543 ORTHO05D004112 9.9e-08 61.6 33 84.8
Lj1A1241T70 Lonicera japonica HOM05D003543 ORTHO05D004112 9.9e-08 61.6 34 82.4
Sed0004311 Sechium edule HOM05D003543 ORTHO05D004112 9.9e-08 61.6 33 84.8
vmacro03632 Vaccinium macrocarpon HOM05D003543 ORTHO05D004112 9.9e-08 61.6 33 84.8
DCAR_030861 Daucus carota HOM05D003543 ORTHO05D004112 1.3e-07 61.2 58 55.2
Gohir.A06G154400 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.3e-07 61.2 35 82.9
Gohir.D06G161100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.3e-07 61.2 35 82.9
CiPaw.10G079000 Carya illinoinensis HOM05D003543 ORTHO05D004112 1.7e-07 60.8 40 77.5
Duzib235G1522 Durio zibethinus HOM05D003543 ORTHO05D004112 2.2e-07 60.5 35 82.9
HanXRQChr09g0238241 Helianthus annuus HOM05D003543 ORTHO05D004112 2.2e-07 60.5 39 76.9
Phvul.003G084700 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 2.2e-07 60.5 34 76.5
Ah.14g087540 Amaranthus hybridus HOM05D003543 ORTHO05D004112 3.8e-07 59.7 36 75.0
PGSC0003DMG400010616 Solanum tuberosum HOM05D004466 ORTHO05D005007 4.9e-07 59.3 56 55.4
TAR631G0001 Trochodendron aralioides HOM05D003543 ORTHO05D004112 4.9e-07 59.3 33 81.8
Duzib160G0009 Durio zibethinus HOM05D003543 ORTHO05D004112 6.4e-07 58.9 35 80.0
PSO541G5465 Papaver somniferum HOM05D003543 ORTHO05D004112 6.4e-07 58.9 33 78.8
PSO675G9394 Papaver somniferum HOM05D003543 ORTHO05D004112 6.4e-07 58.9 33 78.8
AL8G34960 Arabidopsis lyrata HOM05D004466 ORTHO05D005007 8.4e-07 58.5 51 58.8
AUR62037475 Chenopodium quinoa HOM05D004466 ORTHO05D005007 8.4e-07 58.5 55 58.2
AUR62038778 Chenopodium quinoa HOM05D004466 ORTHO05D005007 8.4e-07 58.5 55 58.2
MSTRG.14606 Avicennia marina HOM05D003543 ORTHO05D004112 1.4e-06 57.8 33 81.8
CSS0020081 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 1.4e-06 57.8 34 79.4
Gorai.009G183500 Gossypium raimondii HOM05D003543 ORTHO05D004112 1.4e-06 57.8 40 72.5
HanXRQChr09g0254301 Helianthus annuus HOM05D003543 ORTHO05D004112 1.4e-06 57.8 35 80.0
MBI16_g42305_MAGBIO Magnolia biondii HOM05D003543 ORTHO05D004112 1.4e-06 57.8 33 81.8
TAR629G3525 Trochodendron aralioides HOM05D003543 ORTHO05D004112 1.4e-06 57.8 28 92.9
MSTRG.16032 Avicennia marina HOM05D003543 ORTHO05D004112 1.9e-06 57.4 33 78.8
Gohir.A05G175100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.9e-06 57.4 40 72.5
Os07g0587500 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D005007 1.9e-06 57.4 57 50.9
SMO146G0291 Selaginella moellendorffii HOM05D000215 ORTHO05D008904 1.9e-06 57.4 41 65.9
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 1.9e-06 57.4 33 81.8
DCAR_004899 Daucus carota HOM05D003543 ORTHO05D004112 2.4e-06 57.0 34 76.5
Gohir.D05G178100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 2.4e-06 57.0 36 77.8
CAN.G1263.22 Capsicum annuum HOM05D003543 ORTHO05D004112 4.2e-06 56.2 32 81.2
Sc24g0000310 Simmondsia chinensis HOM05D003543 ORTHO05D004112 4.2e-06 56.2 32 84.4
unitig_748.g7602 Utricularia gibba HOM05D003543 ORTHO05D004112 4.2e-06 56.2 35 74.3
Zm00001eb190130 Zea mays HOM05D000215 ORTHO05D005049 4.2e-06 56.2 40 67.5
Carub.0008s1930 Capsella rubella HOM05D004466 ORTHO05D005007 5.4e-06 55.8 51 58.8
Zm00001eb326060 Zea mays HOM05D000215 ORTHO05D005007 7.1e-06 55.5 57 49.1
BNapus_Darmor_BZH_scaffold_119p00070 Brassica napus HOM05D004466 ORTHO05D005007 9.3e-06 55.1 49 59.2
BNapus_Darmor_BZH_scaffold_97p00360 Brassica napus HOM05D004466 ORTHO05D005007 9.3e-06 55.1 49 59.2
BraA01t04661Z Brassica rapa HOM05D004466 ORTHO05D005007 9.3e-06 55.1 49 59.2
HanXRQChr14g0451341 Helianthus annuus HOM05D003543 ORTHO05D004112 9.3e-06 55.1 33 81.8
Oeu002770.1 Olea europaea HOM05D003543 ORTHO05D004112 9.3e-06 55.1 33 75.8
HPP92_015393 Vanilla planifolia HOM05D000215 ORTHO05D001676 9.3e-06 55.1 40 65.0
HPP92_027001 Vanilla planifolia HOM05D000215 ORTHO05D001676 9.3e-06 55.1 40 65.0


User provided reference genes

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