Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 9.2e-74 280.0 131 100.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-60 235.0 117 94.0
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 7.5e-60 233.8 131 84.7
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 7.5e-60 233.8 131 84.7
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 2.9e-59 231.9 131 84.0
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 2.9e-59 231.9 131 84.0
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.4e-58 228.8 131 82.4
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 4.6e-57 224.6 131 80.2
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 4.6e-57 224.6 131 80.2
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-56 223.0 131 82.4
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 1.3e-56 223.0 131 82.4
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-54 216.5 131 77.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-53 211.8 132 77.3
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 3.7e-51 204.9 129 74.4
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 3.7e-51 204.9 129 74.4
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-49 198.7 131 74.0
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-47 193.4 131 72.5
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.1e-45 185.3 127 71.7
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.0e-45 184.9 131 65.6
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.9e-42 176.0 119 71.4
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.0e-41 171.0 122 68.0
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 9.6e-39 163.7 122 66.4
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 5.3e-37 157.9 128 63.3
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.7e-35 152.9 119 63.0
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 3.6e-30 135.2 128 55.5
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 4.5e-28 128.3 105 61.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.9e-27 125.6 105 60.0
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.1e-26 123.6 105 60.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.1e-26 123.6 105 60.0
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 4.2e-26 121.7 118 58.5
Carub.0004s2401 Capsella rubella HOM05D004407 ORTHO05D005074 1.2e-25 120.2 114 60.5
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 8.7e-24 114.0 138 45.7
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.5e-23 112.5 140 45.7
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.3e-23 112.1 138 46.4
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.3e-23 111.7 139 43.9
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 5.6e-23 111.3 138 45.7
Carub.0006s3434 Capsella rubella HOM05D004407 ORTHO05D005074 2.1e-22 109.4 126 53.2
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.8e-22 108.2 132 47.0
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.1e-21 107.1 145 44.1
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.1e-21 107.1 125 48.8
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.8e-21 106.3 126 50.0
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.8e-21 106.3 126 50.0
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 2.4e-21 105.9 141 45.4
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.4e-21 105.9 136 44.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 2.4e-21 105.9 89 55.1
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.1e-21 105.5 136 44.9
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 3.1e-21 105.5 128 45.3
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 4.0e-21 105.1 118 51.7
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.3e-21 104.8 138 46.4
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 5.3e-21 104.8 134 47.8
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 6.9e-21 104.4 89 56.2
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 6.9e-21 104.4 89 57.3
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.2e-20 103.6 140 45.7
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.2e-20 103.6 127 46.5
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 2.0e-20 102.8 142 44.4
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.6e-20 102.4 133 44.4
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.6e-20 102.4 137 45.3
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.6e-20 102.4 142 44.4
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 3.4e-20 102.1 127 44.1
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.4e-20 102.1 132 44.7
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 3.4e-20 102.1 89 55.1
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.4e-20 102.1 136 45.6
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 4.5e-20 101.7 140 45.0
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 4.5e-20 101.7 97 52.6
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.5e-20 101.7 138 46.4
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 7.6e-20 100.9 126 46.0
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.0e-19 100.5 89 55.1
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.3e-19 100.1 137 46.0
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.7e-19 99.8 97 50.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.7e-19 99.8 125 45.6
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-19 99.4 137 45.3
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.2e-19 99.4 131 44.3
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.9e-19 99.0 127 44.9
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.9e-19 99.0 86 57.0
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 2.9e-19 99.0 118 46.6
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.9e-19 99.0 124 45.2
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.8e-19 98.6 86 53.5
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.9e-19 98.2 139 41.7
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 4.9e-19 98.2 137 44.5
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 4.9e-19 98.2 139 42.4
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 4.9e-19 98.2 143 41.3
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 4.9e-19 98.2 136 40.4
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 6.5e-19 97.8 137 45.3
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 6.5e-19 97.8 125 44.0
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.4e-18 96.7 89 52.8
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.9e-18 96.3 89 52.8
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.9e-18 96.3 119 45.4
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 2.5e-18 95.9 89 50.6
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.5e-18 95.9 118 49.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.5e-18 95.9 89 50.6
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.2e-18 95.5 118 49.2
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.2e-18 95.5 86 52.3
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.2e-18 95.5 95 49.5
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.2e-18 95.5 133 42.9
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.2e-18 95.1 128 43.8
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 4.2e-18 95.1 129 44.2
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 5.5e-18 94.7 87 51.7
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.5e-18 94.7 87 54.0
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.5e-18 94.7 87 54.0
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.5e-18 94.7 87 54.0
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 5.5e-18 94.7 134 45.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 7.1e-18 94.4 128 43.0
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 7.1e-18 94.4 112 46.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 7.1e-18 94.4 131 42.7
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 7.1e-18 94.4 87 51.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 7.1e-18 94.4 86 52.3
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 7.1e-18 94.4 138 42.8
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 9.3e-18 94.0 135 43.7
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.3e-18 94.0 120 49.2
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 9.3e-18 94.0 100 52.0
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-17 93.2 89 49.4
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.6e-17 93.2 118 48.3
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.6e-17 93.2 100 51.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 1.6e-17 93.2 87 51.7
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.0e-17 91.3 87 52.9
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.3e-16 90.1 89 48.3
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.8e-16 89.7 87 49.4
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-16 89.4 94 50.0
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.3e-16 89.4 97 48.5
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.0e-16 89.0 126 43.7
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 8.7e-16 87.4 86 52.3
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 8.7e-16 87.4 84 52.4
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.5e-15 86.7 84 52.4
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.5e-15 86.7 96 51.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.9e-15 86.3 124 43.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.9e-15 86.3 90 45.6
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.5e-15 85.9 90 45.6
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.7e-15 84.7 138 40.6
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.7e-15 84.7 124 42.7
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 7.4e-15 84.3 122 41.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 7.4e-15 84.3 120 43.3
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 9.6e-15 84.0 89 50.6
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 9.6e-15 84.0 87 48.3
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.6e-14 83.2 128 39.8
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 2.1e-14 82.8 138 39.9
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.8e-14 82.4 137 41.6
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.7e-14 82.0 89 50.6
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.7e-14 82.0 89 50.6
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.8e-14 81.6 117 45.3
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.3e-14 81.3 136 39.7
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 8.2e-14 80.9 96 42.7
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.1e-13 79.0 92 46.7
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.1e-13 79.0 92 46.7
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 5.3e-13 78.2 89 44.9
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.9e-13 77.8 93 50.5
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 6.9e-13 77.8 104 43.3
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.2e-12 77.0 128 39.1
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.5e-12 76.6 86 46.5
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 4.5e-12 75.1 120 40.8
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 7.6e-12 74.3 142 35.9
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 1.3e-11 73.6 135 34.8
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.3e-11 73.6 87 43.7
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.7e-11 73.2 88 45.5
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.2e-10 68.9 72 48.6
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 5.5e-10 68.2 86 43.0
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.2e-10 67.8 87 41.4
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.2e-10 67.8 87 41.4
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 7.2e-10 67.8 87 43.7
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.1e-09 66.2 131 35.9
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 4.6e-09 65.1 84 42.9
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 8.7e-08 60.8 129 34.9
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.5e-07 60.1 65 49.2
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.3e-06 57.0 94 38.3
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 2.8e-06 55.8 54 51.9


User provided reference genes

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