Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 7.4e-164 580.5 296 100.0
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-161 572.4 296 98.6
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.0e-161 572.4 296 98.6
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 3.0e-157 558.5 296 96.6
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 3.0e-157 558.5 296 96.6
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-148 530.0 297 91.2
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 7.0e-114 414.5 298 73.8
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 5.2e-109 398.3 298 73.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 3.6e-102 375.6 303 67.7
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.2e-100 370.5 299 65.6
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.5e-100 370.2 297 65.3
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 1.5e-84 317.0 281 64.1
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-74 283.1 199 74.4
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.4e-74 283.1 199 74.4
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 6.0e-73 278.5 190 77.9
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 7.9e-73 278.1 205 71.7
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-72 275.0 202 72.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.9e-71 273.5 188 73.9
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 3.3e-71 272.7 238 65.1
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 7.6e-60 235.0 198 63.1
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-56 223.8 201 63.2
C02p59100 Brassica napus HOM05D003663 ORTHO05D010021 3.7e-54 216.1 171 70.2
BolC2t11965H Brassica oleracea HOM05D003663 ORTHO05D010021 2.4e-53 213.4 171 69.6
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.8e-48 197.2 174 55.7
Carub.0006s2422 Capsella rubella HOM05D003663 ORTHO05D010021 1.1e-39 167.9 99 86.9
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 8.2e-38 161.8 107 74.8
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 5.2e-32 142.5 161 47.2
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 8.8e-32 141.7 185 43.8
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.0e-31 140.6 176 42.6
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.0e-31 140.6 176 42.6
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.7e-30 136.3 185 44.3
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 3.7e-30 136.3 135 51.9
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.8e-29 134.0 188 41.0
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.8e-29 134.0 155 47.7
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.8e-29 134.0 178 42.7
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 4.1e-29 132.9 164 44.5
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.1e-29 132.9 165 45.5
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 4.1e-29 132.9 164 42.7
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.3e-29 132.5 135 48.9
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 2.7e-28 130.2 144 47.9
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.0e-27 128.3 204 37.7
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.3e-27 127.9 135 46.7
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.8e-27 126.3 172 40.1
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.0e-27 125.9 167 41.9
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-26 124.4 135 47.4
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 7.2e-26 122.1 156 44.2
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 9.4e-26 121.7 167 41.9
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 9.4e-26 121.7 193 39.9
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 3.6e-25 119.8 141 44.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.2e-23 114.8 160 41.9
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.2e-23 114.8 144 41.0
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 4.4e-23 112.8 166 41.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-22 111.3 164 40.2
THA.LOC104818768 Tarenaya hassleriana HOM05D003663 ORTHO05D010021 1.7e-22 110.9 97 64.9
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.7e-22 109.8 159 42.1
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 6.3e-22 109.0 167 40.1
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 6.3e-22 109.0 160 40.0
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 8.3e-22 108.6 161 42.2
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.1e-21 108.2 138 43.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.8e-21 107.5 160 40.0
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.8e-21 107.5 159 41.5
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.4e-21 107.1 160 40.6
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 3.1e-21 106.7 160 41.2
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 5.4e-21 105.9 159 39.6
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 5.4e-21 105.9 139 42.4
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 7.0e-21 105.5 167 38.9
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 9.1e-21 105.1 160 39.4
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.2e-20 104.8 160 40.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.5e-20 103.2 174 33.9
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 4.5e-20 102.8 163 35.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.7e-20 102.1 159 38.4
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 7.7e-20 102.1 134 42.5
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.3e-19 101.3 152 39.5
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.3e-19 101.3 159 36.5
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.7e-19 100.9 143 38.5
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.3e-19 100.5 151 38.4
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 5.0e-19 99.4 194 36.6
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 8.6e-19 98.6 168 35.7
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 8.6e-19 98.6 176 35.8
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.1e-18 98.2 141 34.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.5e-18 97.8 165 35.2
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.9e-18 97.4 173 34.7
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 3.2e-18 96.7 166 35.5
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 5.5e-18 95.9 168 36.3
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 5.5e-18 95.9 154 39.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 5.5e-18 95.9 139 36.7
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 5.5e-18 95.9 159 37.7
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 9.5e-18 95.1 163 36.8
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.2e-17 94.7 168 35.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.2e-17 94.7 163 33.7
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.2e-17 94.7 194 33.0
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.6e-17 94.4 163 35.6
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.6e-17 94.4 154 35.1
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.1e-17 94.0 93 46.2
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.1e-17 94.0 136 38.2
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.1e-17 94.0 165 35.8
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 2.8e-17 93.6 182 34.6
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.8e-17 93.6 163 34.4
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.8e-17 93.6 163 35.6
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 3.6e-17 93.2 146 37.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.7e-17 92.8 169 33.7
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 4.7e-17 92.8 168 34.5
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 4.7e-17 92.8 168 34.5
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 4.7e-17 92.8 167 35.3
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 4.7e-17 92.8 170 32.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 6.1e-17 92.4 132 39.4
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 6.1e-17 92.4 182 33.5
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 8.0e-17 92.0 179 33.0
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 8.0e-17 92.0 154 37.0
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 8.0e-17 92.0 111 44.1
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 8.0e-17 92.0 170 32.4
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.0e-16 91.7 132 38.6
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.0e-16 91.7 159 35.8
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.0e-16 91.7 163 34.4
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.4e-16 91.3 156 34.0
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.8e-16 90.9 166 34.3
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.8e-16 90.9 164 34.1
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 2.3e-16 90.5 171 34.5
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.0e-16 89.7 155 36.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 5.2e-16 89.4 189 31.2
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 8.8e-16 88.6 135 35.6
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 8.8e-16 88.6 135 35.6
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 8.8e-16 88.6 160 32.5
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.5e-15 87.8 157 32.5
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.5e-15 87.8 154 32.5
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 2.0e-15 87.4 207 30.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 2.6e-15 87.0 159 31.4
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 3.4e-15 86.7 174 32.2
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.4e-15 86.3 153 33.3
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 4.4e-15 86.3 170 32.4
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 4.4e-15 86.3 136 35.3
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 4.4e-15 86.3 170 34.1
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 5.7e-15 85.9 135 39.3
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 7.5e-15 85.5 131 35.9
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 7.5e-15 85.5 136 35.3
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 9.8e-15 85.1 160 33.8
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.7e-14 84.3 152 32.9
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.2e-14 84.0 171 30.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.8e-14 83.6 123 38.2
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.8e-14 83.6 161 32.3
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 3.7e-14 83.2 159 34.6
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 3.7e-14 83.2 137 38.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 4.9e-14 82.8 163 32.5
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 6.3e-14 82.4 171 30.4
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 8.3e-14 82.0 138 34.8
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.1e-13 81.6 161 31.1
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 1.4e-13 81.3 123 35.8
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.8e-13 80.9 136 35.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.4e-13 80.5 132 34.8
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.1e-13 80.1 111 35.1
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.4e-13 79.3 165 32.1
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 2.7e-12 77.0 140 36.4
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 2.3e-11 73.9 119 40.3
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 5.0e-11 72.8 162 28.4
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 6.6e-11 72.4 134 34.3
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 6.6e-11 72.4 160 28.8
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.5e-10 71.2 115 40.0
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 2.8e-09 67.0 144 30.6
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 6.8e-08 62.4 165 27.3
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.2e-07 61.6 80 38.8
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.3e-06 58.2 153 25.5
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.2e-06 57.4 109 33.9
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 2.9e-06 57.0 162 25.9
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 2.9e-06 57.0 183 27.9
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 3.7e-06 56.6 145 26.2
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 3.7e-06 56.6 145 26.2


User provided reference genes

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