Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 4.0e-134 481.9 326 100.0
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 4.0e-134 481.9 326 99.1
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 4.0e-134 481.9 326 100.0
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 4.8e-124 448.4 326 95.4
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 4.8e-124 448.4 326 95.4
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 1.5e-109 400.2 332 84.0
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 1.0e-89 334.3 326 69.6
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 1.9e-88 330.1 326 68.4
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 5.6e-88 328.6 330 67.6
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 2.8e-87 326.2 298 74.5
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 2.2e-84 316.6 329 70.2
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 6.0e-82 308.5 337 74.8
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 3.4e-77 292.7 341 68.3
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 1.9e-75 287.0 328 68.6
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 1.1e-72 277.7 313 68.7
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 3.4e-69 266.2 349 64.8
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 5.4e-67 258.8 318 65.7
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 5.4e-67 258.8 322 64.0
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 3.9e-65 252.7 314 62.1
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.6e-55 220.7 310 57.7
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 6.9e-54 215.3 307 57.0
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 4.5e-53 212.6 327 49.2
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 7.6e-53 211.8 302 55.3
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 1.9e-51 207.2 315 50.5
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 9.3e-51 204.9 329 49.2
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 4.6e-50 202.6 299 54.8
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 4.6e-50 202.6 316 50.3
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 6.0e-50 202.2 313 49.8
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 6.0e-50 202.2 319 51.1
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 1.0e-49 201.4 307 54.7
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 1.8e-49 200.7 308 52.6
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 2.3e-49 200.3 339 50.1
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 2.3e-49 200.3 326 49.4
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 5.1e-49 199.1 338 50.3
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.5e-48 197.6 315 53.0
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.5e-48 196.8 319 51.7
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 4.3e-48 196.1 318 52.5
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.3e-47 194.5 340 46.2
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.3e-47 194.5 324 52.5
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 2.2e-47 193.7 299 53.5
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 3.7e-47 193.0 304 53.0
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 4.8e-47 192.6 315 48.3
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 6.3e-47 192.2 334 46.1
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.4e-46 191.0 313 50.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 3.1e-46 189.9 299 53.2
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 4.1e-46 189.5 326 46.6
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 6.9e-46 188.7 338 48.2
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 9.0e-46 188.3 318 52.5
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 2.0e-45 187.2 329 44.7
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.4e-45 186.4 340 47.9
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.9e-45 185.7 318 48.1
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 7.6e-45 185.3 318 52.2
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.0e-44 184.9 315 48.9
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 1.0e-44 184.9 305 50.8
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 1.3e-44 184.5 327 51.1
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 1.7e-44 184.1 339 46.9
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.7e-44 184.1 317 48.3
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 2.2e-44 183.7 307 45.9
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 2.9e-44 183.3 332 48.8
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.9e-44 183.3 340 49.7
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 2.9e-44 183.3 318 51.9
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 3.8e-44 183.0 320 46.2
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 5.0e-44 182.6 308 52.6
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 5.0e-44 182.6 339 46.6
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 5.0e-44 182.6 326 47.9
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 8.5e-44 181.8 309 48.9
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 1.1e-43 181.4 317 47.0
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 1.4e-43 181.0 316 46.8
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 1.9e-43 180.6 351 43.9
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.5e-43 180.3 195 70.3
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 1.2e-42 177.9 318 46.5
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 2.7e-42 176.8 333 45.9
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 2.7e-42 176.8 331 46.2
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 4.6e-42 176.0 311 50.8
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 4.6e-42 176.0 327 45.9
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 7.9e-42 175.3 322 43.2
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 1.0e-41 174.9 323 48.9
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 1.4e-41 174.5 316 44.0
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 2.3e-41 173.7 307 43.3
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 3.9e-41 172.9 311 48.2
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 5.1e-41 172.6 336 47.6
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 1.9e-40 170.6 377 41.6
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 5.7e-40 169.1 303 47.5
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 6.3e-39 165.6 281 54.1
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 1.4e-38 164.5 343 48.7
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 3.1e-38 163.3 310 45.8
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 1.3e-36 157.9 335 45.1
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 1.9e-35 154.1 303 47.5
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 2.1e-34 150.6 295 49.8
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 5.1e-33 146.0 312 45.2
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.5e-32 144.4 317 46.1
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.6e-32 143.7 261 51.0
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 3.3e-32 143.3 315 39.4
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 4.4e-32 142.9 321 45.5
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 2.8e-31 140.2 309 40.1
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 4.1e-30 136.3 332 41.3
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 3.8e-28 129.8 326 42.3
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 6.5e-28 129.0 356 36.0
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.9e-27 127.5 294 44.2
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 2.5e-27 127.1 298 44.3
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.5e-27 127.1 293 44.7
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 7.4e-24 115.5 336 35.4
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 2.8e-23 113.6 337 39.2
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.4e-22 111.3 155 50.3
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 1.4e-22 111.3 329 40.1
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.1e-22 110.2 295 43.1
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 1.6e-21 107.8 316 44.0
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 2.6e-21 107.1 168 47.0
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 3.5e-21 106.7 232 40.9
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 6.5e-20 102.4 298 36.9
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 7.2e-19 99.0 325 36.6
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 3.6e-18 96.7 162 47.5
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 8.0e-18 95.5 329 38.3
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 6.7e-17 92.4 202 41.6
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 6.3e-15 85.9 292 31.5
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 3.1e-14 83.6 92 53.3
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.0e-12 78.6 293 33.8
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 1.6e-10 71.2 216 35.6
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 3.6e-10 70.1 233 36.9
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.3e-09 67.4 89 55.1
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 3.0e-09 67.0 213 35.7
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 8.8e-09 65.5 46 71.7
SEGI_24344 Sequoiadendron giganteum HOM05D001976 ORTHO05D001960 1.5e-08 64.7 300 28.7
Eucgr.A01216 Eucalyptus grandis HOM05D002337 ORTHO05D002412 3.1e-06 57.0 102 39.2
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.1e-06 55.5 32 84.4


User provided reference genes

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