Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.5e-297 1025.4 511 100.0
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 4.6e-278 960.7 503 96.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 2.3e-277 958.4 498 97.0
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 9.5e-276 953.0 498 96.4
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.1e-275 951.8 507 94.7
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 6.8e-266 920.2 524 90.5
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 1.2e-265 919.5 498 92.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 2.1e-262 908.7 498 90.0
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.0e-261 906.4 498 90.8
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.6e-259 897.9 497 90.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 8.1e-259 896.7 498 89.4
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.2e-254 882.9 517 87.4
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.9e-253 877.9 510 85.5
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 5.1e-245 850.9 514 81.9
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 2.5e-220 768.8 498 75.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 3.3e-220 768.5 498 75.5
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 3.3e-220 768.5 498 75.5
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 9.0e-218 760.4 498 75.3
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 1.5e-217 759.6 498 74.1
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.3e-216 756.5 497 75.5
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 2.2e-216 755.7 508 72.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 2.2e-216 755.7 497 74.0
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 3.8e-216 755.0 497 74.4
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 5.0e-216 754.6 497 74.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 6.5e-216 754.2 498 74.5
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 7.2e-215 750.7 504 73.4
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 7.2e-215 750.7 497 73.8
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 9.3e-215 750.4 497 74.4
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.6e-214 748.4 507 73.4
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 3.6e-214 748.4 499 72.5
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 6.1e-214 747.7 500 72.4
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 7.9e-214 747.3 499 72.7
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 2.3e-213 745.7 503 73.2
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.1e-212 743.4 497 71.8
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.5e-212 743.0 498 73.1
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.3e-211 740.0 507 72.6
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 4.8e-211 738.0 500 71.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.2e-211 737.3 503 72.6
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.4e-210 736.5 480 74.4
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 4.1e-210 734.9 498 71.3
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 3.4e-209 731.9 495 71.9
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 3.4e-209 731.9 498 71.1
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 4.5e-209 731.5 498 71.1
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 5.9e-209 731.1 498 70.5
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 5.9e-209 731.1 498 72.1
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.3e-208 729.9 498 70.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 1.3e-208 729.9 497 72.0
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.7e-208 729.6 503 72.0
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 3.8e-208 728.4 498 70.7
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.0e-208 728.0 499 71.5
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.1e-207 726.9 498 71.3
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.0e-205 720.3 501 71.5
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 2.3e-205 719.2 501 70.5
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 3.9e-205 718.4 497 70.6
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 8.8e-205 717.2 517 68.1
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 9.7e-204 713.8 497 70.4
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 1.3e-203 713.4 512 68.8
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 2.8e-203 712.2 505 69.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.4e-202 709.9 508 68.9
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 6.5e-200 701.0 503 69.0
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 3.6e-198 695.3 605 59.7
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 6.1e-198 694.5 497 69.6
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 3.9e-197 691.8 500 68.4
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 5.2e-197 691.4 499 67.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 1.7e-195 686.4 496 67.9
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 8.2e-195 684.1 496 68.1
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 8.2e-195 684.1 502 68.1
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 2.0e-193 679.5 498 66.3
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 5.9e-193 677.9 514 66.7
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.7e-192 676.4 497 67.8
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 2.2e-192 676.0 503 65.4
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 2.9e-192 675.6 496 67.5
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 4.2e-191 671.8 497 66.0
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 7.2e-191 671.0 497 66.6
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-190 670.2 493 67.1
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.0e-190 667.5 503 64.2
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.8e-189 666.4 503 64.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 3.0e-189 665.6 498 65.5
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.7e-187 659.8 499 66.1
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 7.7e-185 651.0 442 72.9
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 5.0e-184 648.3 462 70.3
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 2.3e-181 639.4 497 64.0
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 8.8e-181 637.5 517 61.3
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.0e-180 636.3 598 56.0
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 9.8e-180 634.0 479 66.2
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.4e-178 630.2 507 61.1
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 3.6e-174 615.5 518 61.8
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-172 609.8 426 68.8
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 2.0e-172 609.8 521 59.1
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 4.1e-162 575.5 438 66.4
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.7e-152 543.5 488 53.1
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.5e-148 530.4 443 61.2
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.0e-136 491.1 438 66.0
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 5.8e-132 475.3 443 62.1
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.6e-126 457.2 299 81.3
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.0e-120 438.0 511 45.2
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-119 434.1 354 63.6
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.3e-118 431.0 505 44.8
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 5.3e-117 425.6 375 64.5
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.9e-104 382.9 259 73.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 3.9e-96 356.3 511 37.6
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.0e-91 341.7 430 40.9
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 6.5e-83 312.4 253 61.7
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.5e-82 309.3 256 60.5
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.2e-81 308.1 190 72.6
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 4.1e-69 266.5 206 61.7
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.5e-68 263.1 168 77.4
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.3e-64 250.8 228 59.2
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 4.5e-52 209.9 425 33.2
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 2.6e-47 194.1 174 62.6
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 8.0e-41 172.6 225 43.6
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 8.3e-38 162.5 455 26.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.1e-37 162.2 112 64.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 2.1e-33 147.9 506 25.5
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.9e-30 137.5 163 47.9
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.4e-29 134.4 69 87.0
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 3.2e-29 134.0 512 23.6
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.1e-28 131.3 86 70.9
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 3.0e-27 127.5 102 62.7
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 2.5e-26 124.4 84 70.2
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.6e-26 123.2 87 64.4
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.2e-25 122.1 109 49.5
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.8e-25 120.9 87 64.4
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.7e-25 120.2 116 52.6
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.8e-24 118.2 109 48.6
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 7.6e-23 112.8 61 82.0
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-22 111.7 87 59.8
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.7e-22 111.7 115 47.8
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.4e-22 109.8 75 68.0
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 1.4e-21 108.6 79 60.8
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 9.2e-21 105.9 61 77.0
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.6e-20 105.1 83 61.4
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-20 104.4 68 75.0
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.1e-18 99.0 62 74.2
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 1.9e-18 98.2 115 47.0
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 4.3e-18 97.1 78 56.4
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.7e-17 93.6 61 70.5
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 6.2e-17 93.2 52 78.8
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 3.1e-16 90.9 77 61.0
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.8e-14 84.0 55 65.5
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 4.2e-13 80.5 80 46.2
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-11 75.5 87 50.6
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.9e-11 73.9 55 63.6
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.9e-11 73.9 55 63.6
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-10 71.2 55 54.5
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.6e-10 69.3 79 40.5
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-08 65.9 61 47.5
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 6.9e-08 63.2 31 90.3
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 2.0e-07 61.6 42 69.0
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.4e-07 60.8 87 39.1
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.9e-07 59.3 60 48.3
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 3.8e-06 57.4 59 42.4


User provided reference genes

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