Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02686 Brassica carinata HOM05D003405 ORTHO05D003920 5.0e-171 604.4 307 100.0
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 7.9e-92 341.3 455 46.8
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 8.1e-89 331.3 431 48.7
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 9.0e-88 327.8 456 48.7
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 9.0e-88 327.8 325 55.4
BcaC01g00579 Brassica carinata HOM05D003405 ORTHO05D003920 4.5e-87 325.5 312 56.7
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 2.5e-82 309.7 251 74.5
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 4.3e-82 308.9 310 53.2
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 4.5e-79 298.9 428 44.4
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 4.5e-79 298.9 428 44.4
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 1.7e-78 297.0 251 69.7
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 4.9e-78 295.4 436 47.2
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 8.4e-78 294.7 431 45.0
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 2.5e-77 293.1 436 43.3
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.2e-76 290.8 430 45.8
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.6e-76 290.4 431 46.2
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 6.0e-76 288.5 439 44.0
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 1.8e-75 287.0 429 45.9
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.9e-74 283.5 423 42.3
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 7.4e-74 281.6 300 49.3
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 4.8e-73 278.9 304 49.0
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.2e-70 270.0 274 50.0
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 2.9e-70 269.6 283 49.5
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 1.1e-69 267.7 304 47.7
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 2.5e-69 266.5 310 48.1
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 2.1e-68 263.5 455 42.0
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 6.1e-68 261.9 307 46.3
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 3.3e-66 256.1 306 46.1
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 5.7e-66 255.4 309 45.3
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.3e-65 254.2 273 47.6
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 1.6e-65 253.8 273 50.5
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.2e-65 253.4 306 45.8
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 2.2e-65 253.4 306 45.8
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.8e-65 253.1 272 47.1
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 6.3e-65 251.9 306 45.8
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 8.2e-65 251.5 322 42.2
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 3.2e-61 239.6 306 43.8
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 4.2e-61 239.2 303 43.6
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 5.5e-61 238.8 306 43.5
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 7.2e-61 238.4 291 47.1
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 2.7e-60 236.5 312 44.6
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 4.6e-60 235.7 282 44.3
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 3.3e-58 229.6 433 37.6
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 4.4e-58 229.2 291 44.0
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 4.4e-58 229.2 295 42.7
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 5.7e-58 228.8 310 41.3
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.8e-57 226.5 404 35.6
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.8e-57 226.5 404 35.6
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 2.4e-56 223.4 306 41.5
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 9.1e-56 221.5 283 42.8
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.2e-55 221.1 243 46.5
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 1.5e-55 220.7 263 46.0
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 2.0e-55 220.3 303 42.9
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 7.7e-55 218.4 318 39.0
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 1.0e-54 218.0 283 42.0
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 2.2e-54 216.9 283 42.0
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 2.9e-54 216.5 200 56.0
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 3.8e-54 216.1 337 42.1
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 6.5e-54 215.3 284 41.9
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 8.5e-54 214.9 292 43.5
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 8.5e-54 214.9 280 42.9
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 1.4e-53 214.2 291 41.6
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.4e-53 214.2 323 39.9
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 1.9e-53 213.8 177 58.2
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 2.5e-53 213.4 283 42.8
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 2.5e-53 213.4 275 41.5
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 5.5e-53 212.2 298 41.3
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 5.5e-53 212.2 352 38.1
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 2.1e-52 210.3 292 40.4
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 4.7e-52 209.1 292 41.1
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.8e-51 207.2 292 41.1
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.8e-51 207.2 287 41.1
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.3e-51 206.8 294 40.8
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 1.5e-50 204.1 290 40.0
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 2.0e-50 203.8 306 39.9
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 3.3e-50 203.0 434 35.0
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 3.3e-50 203.0 201 54.2
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 3.3e-50 203.0 201 54.2
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 3.3e-50 203.0 277 41.5
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 3.3e-50 203.0 268 42.9
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 9.7e-50 201.4 306 37.6
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 1.3e-49 201.1 296 41.2
Atru.chr1.1031 Acer truncatum HOM05D003405 ORTHO05D003920 4.8e-49 199.1 284 41.2
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 1.8e-48 197.2 318 39.0
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 2.0e-47 193.7 271 40.6
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 5.9e-47 192.2 265 41.5
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 1.3e-46 191.0 321 40.5
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 1.7e-46 190.7 267 39.3
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 5.0e-46 189.1 267 39.7
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 8.5e-46 188.3 261 41.4
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 1.5e-45 187.6 267 39.7
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 1.5e-45 187.6 275 40.0
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 2.5e-45 186.8 323 38.4
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.2e-45 186.4 244 41.8
Cc04_g14810 Coffea canephora HOM05D003405 ORTHO05D003920 7.2e-45 185.3 165 57.0
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 7.2e-45 185.3 318 37.4
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 4.7e-44 182.6 244 42.6
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 8.0e-44 181.8 266 40.6
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.4e-43 181.0 417 31.9
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 3.0e-43 179.9 244 41.8
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 3.0e-43 179.9 246 40.7
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 1.2e-42 177.9 235 43.0
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 1.2e-42 177.9 283 38.2
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 2.0e-42 177.2 261 39.8
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 3.3e-42 176.4 301 36.5
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 1.3e-41 174.5 219 46.1
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 1.7e-41 174.1 211 49.8
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 3.7e-41 172.9 313 41.2
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 3.7e-41 172.9 307 36.8
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 4.8e-41 172.6 433 31.4
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 4.8e-41 172.6 433 31.4
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 1.4e-40 171.0 208 45.2
SEGI_38491 Sequoiadendron giganteum HOM05D003405 ORTHO05D003920 2.4e-40 170.2 165 53.3
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 3.1e-40 169.9 426 31.7
Oeu047246.2 Olea europaea HOM05D003405 ORTHO05D003920 3.1e-40 169.9 151 56.3
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 5.3e-40 169.1 239 42.3
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 7.0e-40 168.7 230 40.4
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 2.0e-39 167.2 297 37.0
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 4.5e-39 166.0 251 39.4
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 1.0e-38 164.9 300 36.0
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 1.7e-38 164.1 291 34.4
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 3.8e-38 162.9 291 35.1
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 1.9e-37 160.6 309 33.7
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 4.2e-37 159.5 314 34.1
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 4.2e-37 159.5 247 40.1
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 1.6e-36 157.5 297 35.4
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.0e-35 154.8 260 38.8
Aqoxy2G03536 Aquilegia oxysepala HOM05D003405 ORTHO05D003920 5.2e-35 152.5 161 51.6
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 6.8e-35 152.1 290 32.8
Haze_21718 Corylus avellana HOM05D003405 ORTHO05D003920 1.2e-34 151.4 139 55.4
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 1.2e-34 151.4 231 41.6
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.0e-34 150.6 246 39.8
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 7.5e-34 148.7 268 35.1
HPP92_003102 Vanilla planifolia HOM05D003405 ORTHO05D003920 7.5e-34 148.7 228 39.0
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.7e-33 147.5 282 32.6
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.7e-33 147.5 282 32.6
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 1.1e-32 144.8 218 40.4
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.4e-32 144.4 281 32.0
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 4.1e-32 142.9 142 50.7
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 5.4e-32 142.5 287 32.4
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 2.7e-31 140.2 287 34.1
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 4.5e-31 139.4 311 32.5
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 5.9e-31 139.0 284 33.1
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.7e-30 137.5 290 33.4
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 1.7e-30 137.5 289 31.5
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 1.1e-29 134.8 280 31.8
Zm00001eb142980 Zea mays HOM05D003405 ORTHO05D003920 1.5e-29 134.4 289 34.9
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.9e-29 134.0 284 33.1
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 9.5e-29 131.7 259 35.1
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.2e-28 131.3 245 34.7
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 2.8e-28 130.2 283 32.5
PRCOL_00001431 Prasinoderma coloniale HOM05D003405 ORTHO05D003920 3.6e-28 129.8 316 31.0
BraA01t00304Z Brassica rapa HOM05D003405 ORTHO05D003920 2.3e-27 127.1 131 53.4
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.3e-27 127.1 259 35.5
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 2.0e-26 124.0 85 64.7
BraA03t14247Z Brassica rapa HOM05D003405 ORTHO05D003920 5.7e-26 122.5 71 83.1
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 5.7e-26 122.5 269 31.6
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 9.8e-26 121.7 228 35.5
SMO361G0182 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 9.8e-26 121.7 304 28.3
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 2.8e-25 120.2 126 51.6
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 8.3e-25 118.6 190 37.4
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 7.8e-23 112.1 361 28.8
Psat2g004040 Pisum sativum HOM05D003405 ORTHO05D003920 1.0e-22 111.7 260 31.5
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 5.0e-22 109.4 304 28.3
SMO361G0432 Selaginella moellendorffii HOM05D003405 ORTHO05D003920 5.0e-22 109.4 304 27.0
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 8.6e-22 108.6 341 27.3
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 3.3e-21 106.7 302 29.8
Cfa021699 Carpinus fangiana HOM05D003405 ORTHO05D003920 1.6e-20 104.4 335 25.4
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 8.9e-19 98.6 76 57.9
arahy.Tifrunner.gnm1.ann1.Q3GRJ7 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-18 97.8 116 43.1
PGSC0003DMG401005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 3.7e-17 93.2 61 72.1
Carub.0003s3263 Capsella rubella HOM05D003405 ORTHO05D003920 4.9e-17 92.8 65 63.1
MCO01G177 Micromonas commoda HOM05D003405 ORTHO05D003920 1.4e-16 91.3 341 24.0
A01p03190 Brassica napus HOM05D003405 ORTHO05D003920 2.4e-16 90.5 107 45.8
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 4.1e-16 89.7 264 29.9
arahy.Tifrunner.gnm1.ann1.N6YQ7G Arachis hypogaea HOM05D003405 ORTHO05D003920 2.7e-15 87.0 105 45.7
Cre01.g035000 Chlamydomonas reinhardtii HOM05D003405 ORTHO05D003920 5.9e-15 85.9 78 52.6
Ca_21295_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 7.8e-15 85.5 99 45.5
Duzib106G0895 Durio zibethinus HOM05D003405 ORTHO05D003920 1.1e-13 81.6 88 48.9
VMungo0540G1027 Vigna mungo HOM05D003405 ORTHO05D003920 1.1e-13 81.6 294 26.5
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 7.3e-13 79.0 63 58.7
AL3G51990 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.4e-11 74.7 48 68.8
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 1.4e-11 74.7 114 42.1
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 2.0e-10 70.9 85 42.4


User provided reference genes

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