Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 4.0e-81 304.7 152 100.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 1.2e-77 293.1 148 97.3
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 1.2e-77 293.1 148 97.3
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 1.6e-77 292.7 148 96.6
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 1.6e-77 292.7 148 96.6
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.6e-77 292.7 148 96.6
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 1.0e-76 290.0 148 94.6
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 2.3e-76 288.9 148 93.9
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 3.0e-76 288.5 148 93.2
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 3.0e-76 288.5 148 93.9
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 3.0e-76 288.5 148 93.9
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 1.1e-75 286.6 148 93.2
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.6e-74 282.7 148 91.9
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 3.4e-72 275.0 152 89.5
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 5.8e-72 274.2 174 79.9
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 7.6e-72 273.9 152 88.8
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 7.6e-72 273.9 152 88.8
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 5.5e-70 267.7 146 87.7
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 4.8e-66 254.6 148 82.4
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 1.7e-63 246.1 127 92.1
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 2.3e-52 209.1 149 66.4
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 5.1e-52 208.0 148 65.5
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 2.6e-51 205.7 148 65.5
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 6.3e-50 201.1 153 62.7
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 3.1e-49 198.7 146 66.4
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 9.1e-49 197.2 146 65.1
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 1.5e-48 196.4 148 65.5
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 1.5e-48 196.4 147 63.9
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 4.5e-48 194.9 149 65.1
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 3.8e-47 191.8 148 60.1
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 8.5e-47 190.7 149 61.7
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 8.5e-47 190.7 148 61.5
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 1.4e-46 189.9 166 57.2
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 1.9e-46 189.5 149 61.1
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.9e-46 189.5 149 61.1
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 3.2e-46 188.7 149 61.1
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 7.2e-46 187.6 147 61.2
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 7.2e-46 187.6 147 63.3
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 9.4e-46 187.2 148 60.8
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.6e-45 186.4 149 60.4
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.6e-45 186.4 148 59.5
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 2.7e-45 185.7 149 59.1
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 3.6e-45 185.3 148 62.2
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 4.7e-45 184.9 149 61.1
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 6.1e-45 184.5 149 62.4
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 6.1e-45 184.5 149 61.7
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 7.9e-45 184.1 149 62.4
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.4e-44 183.3 149 60.4
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 1.4e-44 183.3 149 59.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.8e-44 183.0 148 58.1
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 1.8e-44 183.0 148 58.1
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 2.3e-44 182.6 149 59.1
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.9e-44 181.8 147 59.9
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 5.2e-44 181.4 149 60.4
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 6.7e-44 181.0 146 58.9
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 8.8e-44 180.6 146 61.6
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 8.8e-44 180.6 151 59.6
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 3.3e-43 178.7 143 60.8
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 3.3e-43 178.7 147 59.9
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 4.4e-43 178.3 148 55.4
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 7.4e-43 177.6 151 58.9
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 9.7e-43 177.2 149 59.1
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.3e-42 176.8 151 57.6
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 1.7e-42 176.4 149 57.0
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 2.8e-42 175.6 149 58.4
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 4.8e-42 174.9 146 57.5
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.8e-42 174.9 134 62.7
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 4.8e-42 174.9 151 57.0
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 4.8e-42 174.9 153 59.5
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 8.2e-42 174.1 149 56.4
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.8e-41 172.9 135 61.5
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 1.8e-41 172.9 149 60.4
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 2.0e-40 169.5 151 58.9
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 2.6e-40 169.1 144 56.9
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.5e-40 168.3 135 60.7
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 7.7e-40 167.5 149 56.4
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 1.7e-39 166.4 146 56.2
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.7e-39 166.4 147 55.1
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 3.8e-39 165.2 147 54.4
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 3.8e-39 165.2 146 56.8
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.9e-38 162.9 133 62.4
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 3.2e-38 162.2 147 57.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 5.5e-38 161.4 132 61.4
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 2.7e-37 159.1 146 52.7
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 4.7e-37 158.3 146 53.4
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 8.0e-37 157.5 144 57.6
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.0e-36 157.1 129 58.9
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.4e-36 156.8 127 58.3
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 2.3e-36 156.0 129 61.2
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.0e-35 152.9 129 58.1
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 2.0e-35 152.9 137 56.2
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 3.3e-35 152.1 115 63.5
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 1.3e-34 150.2 115 62.6
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.7e-34 149.8 137 55.5
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 2.8e-34 149.1 137 58.4
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 8.2e-34 147.5 128 59.4
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.1e-33 145.2 102 67.6
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.7e-31 139.8 110 66.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.9e-30 136.3 114 57.0
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 2.5e-30 136.0 92 73.9
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 2.6e-27 125.9 115 55.7
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 4.4e-27 125.2 119 53.8
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.1e-25 120.6 212 36.8
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 6.1e-21 104.8 128 46.1
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 5.2e-20 101.7 95 51.6
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 4.1e-17 92.0 63 65.1
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 4.7e-13 78.6 140 33.6
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 1.2e-08 63.9 76 43.4
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 1.6e-08 63.5 114 33.3
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 5.9e-08 61.6 53 54.7
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-06 57.4 40 55.0
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.1e-06 57.4 40 55.0


User provided reference genes

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