Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02661 Brassica carinata HOM05D005594 ORTHO05D006403 1.2e-50 203.0 106 100.0
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 3.7e-41 171.4 105 87.6
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 1.4e-40 169.5 105 87.6
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.4e-40 169.5 105 87.6
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 1.4e-40 169.5 105 87.6
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 7.0e-40 167.2 109 82.6
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 2.0e-34 149.1 107 73.8
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 9.8e-34 146.7 107 73.8
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 2.2e-33 145.6 105 74.3
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 3.5e-31 138.3 106 70.8
Thhalv10008245m.g Eutrema salsugineum HOM05D005594 ORTHO05D006403 7.3e-29 130.6 111 68.5
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 4.7e-28 127.9 114 69.3
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 4.6e-23 111.3 112 61.6
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 2.3e-19 99.0 108 55.6
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 2.0e-18 95.9 112 51.8
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 2.0e-18 95.9 110 54.5
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 1.7e-17 92.8 112 50.9
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 2.2e-17 92.4 110 51.8
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 2.9e-17 92.0 112 50.9
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 1.1e-16 90.1 112 50.0
FAN08G3514 Fragaria x ananassa HOM05D005594 ORTHO05D006403 1.4e-16 89.7 114 52.6
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 1.9e-16 89.4 112 49.1
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 2.4e-16 89.0 112 50.0
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 3.2e-16 88.6 113 50.4
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 3.2e-16 88.6 109 47.7
FvH4_5g34380 Fragaria vesca HOM05D005594 ORTHO05D006403 7.1e-16 87.4 99 54.5
FAN18G0194 Fragaria x ananassa HOM05D005594 ORTHO05D006403 7.1e-16 87.4 99 54.5
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 1.6e-15 86.3 108 49.1
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 1.6e-15 86.3 112 51.8
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 2.1e-15 85.9 112 50.9
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 2.7e-15 85.5 103 46.6
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 2.7e-15 85.5 111 48.6
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 3.5e-15 85.1 110 49.1
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 4.6e-15 84.7 112 50.0
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 4.6e-15 84.7 94 53.2
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 4.6e-15 84.7 95 51.6
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 6.0e-15 84.3 108 44.4
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 7.8e-15 84.0 112 49.1
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 7.8e-15 84.0 112 48.2
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 7.8e-15 84.0 112 49.1
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 1.0e-14 83.6 106 51.9
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 1.3e-14 83.2 112 44.6
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 1.3e-14 83.2 112 49.1
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 1.7e-14 82.8 96 52.1
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 2.3e-14 82.4 108 47.2
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 2.3e-14 82.4 112 50.9
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 2.3e-14 82.4 112 49.1
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 3.0e-14 82.0 111 48.6
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 3.0e-14 82.0 110 46.4
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 3.0e-14 82.0 112 46.4
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 3.9e-14 81.6 112 46.4
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 3.9e-14 81.6 112 49.1
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 3.9e-14 81.6 106 47.2
Lj1g0021697 Lotus japonicus HOM05D005594 ORTHO05D006403 5.1e-14 81.3 112 53.6
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 5.1e-14 81.3 113 49.6
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 6.6e-14 80.9 111 47.7
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 6.6e-14 80.9 112 46.4
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 6.6e-14 80.9 113 49.6
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 6.6e-14 80.9 112 49.1
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 8.6e-14 80.5 112 49.1
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 8.6e-14 80.5 108 48.1
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 8.6e-14 80.5 103 45.6
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 1.1e-13 80.1 112 47.3
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 1.5e-13 79.7 110 46.4
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 1.5e-13 79.7 110 48.2
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 1.5e-13 79.7 108 53.7
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 1.5e-13 79.7 112 47.3
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 1.9e-13 79.3 111 48.6
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 1.9e-13 79.3 112 48.2
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 1.9e-13 79.3 112 46.4
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 2.5e-13 79.0 110 45.5
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 2.5e-13 79.0 109 47.7
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 2.5e-13 79.0 108 46.3
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 3.3e-13 78.6 107 45.8
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 4.3e-13 78.2 108 44.4
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 4.3e-13 78.2 112 43.8
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 5.6e-13 77.8 112 47.3
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 7.3e-13 77.4 113 40.7
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 9.5e-13 77.0 111 48.6
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 9.5e-13 77.0 106 45.3
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 9.5e-13 77.0 112 47.3
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 9.5e-13 77.0 105 46.7
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 1.2e-12 76.6 105 42.9
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 1.2e-12 76.6 105 42.9
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 1.2e-12 76.6 111 46.8
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 1.6e-12 76.3 108 45.4
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 1.6e-12 76.3 109 47.7
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 2.1e-12 75.9 112 44.6
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 2.1e-12 75.9 106 44.3
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 2.8e-12 75.5 79 51.9
Oeu034716.2 Olea europaea HOM05D005594 ORTHO05D006403 2.8e-12 75.5 77 58.4
RcHm_v2.0_Chr7g0234971 Rosa chinensis HOM05D005594 ORTHO05D006403 3.6e-12 75.1 120 43.3
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 8.1e-12 73.9 112 44.6
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 8.1e-12 73.9 112 44.6
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 8.1e-12 73.9 112 46.4
SGA_v2.0_scaffold13G06499 Striga asiatica HOM05D005594 ORTHO05D006403 8.1e-12 73.9 115 48.7
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 1.1e-11 73.6 106 44.3
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 1.4e-11 73.2 112 45.5
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 1.8e-11 72.8 107 45.8
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 4.0e-11 71.6 93 43.0
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 8.9e-11 70.5 114 45.6
Ca_26381_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 2.0e-10 69.3 111 41.4
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 2.0e-10 69.3 111 43.2
Ca_11286_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 3.4e-10 68.6 111 40.5
Medtr3g099850 Medicago truncatula HOM05D005594 ORTHO05D006403 3.4e-10 68.6 112 42.9
Pp3c26_12080 Physcomitrium patens HOM05D005594 ORTHO05D006403 1.3e-09 66.6 106 38.7
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 1.3e-09 66.6 108 39.8
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 1.3e-09 66.6 116 39.7
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 1.7e-09 66.2 113 40.7
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 2.2e-09 65.9 116 38.8
HanXRQChr15g0472131 Helianthus annuus HOM05D005594 ORTHO05D006403 3.8e-09 65.1 105 43.8
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 8.4e-09 63.9 111 42.3
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 5.4e-08 61.2 65 50.8
ECA248G0412 Erigeron canadensis HOM05D005594 ORTHO05D006403 7.1e-08 60.8 107 41.1
PSO017G1526 Papaver somniferum HOM05D005594 ORTHO05D006403 9.2e-08 60.5 106 42.5
Zm00001eb306590 Zea mays HOM05D005594 ORTHO05D006403 1.2e-07 60.1 116 37.9
SEGI_07360 Sequoiadendron giganteum HOM05D005594 ORTHO05D006403 2.7e-07 58.9 111 38.7
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 6.0e-07 57.8 94 43.6
MD15G1388800 Malus domestica HOM05D005594 ORTHO05D006403 7.8e-07 57.4 87 48.3


User provided reference genes

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