Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 8.9e-185 650.2 345 100.0
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 2.3e-180 635.6 345 97.7
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 2.3e-180 635.6 345 97.7
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 6.6e-180 634.0 345 97.4
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 6.6e-180 634.0 345 97.4
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 6.6e-180 634.0 345 97.4
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 7.3e-179 630.6 345 96.5
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.6e-178 629.4 345 96.5
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 6.2e-178 627.5 345 96.2
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.1e-177 626.7 345 95.7
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.8e-177 625.9 345 95.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.5e-176 622.9 345 95.4
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 2.6e-176 622.1 345 95.1
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.4e-176 621.7 357 93.3
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.9e-175 618.6 345 94.5
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 1.1e-171 606.7 357 90.2
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.5e-165 585.1 345 87.5
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.3e-148 529.3 343 78.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 3.9e-148 528.5 343 79.0
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 5.1e-148 528.1 343 78.1
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 8.7e-148 527.3 343 79.3
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 8.7e-148 527.3 343 78.1
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.9e-147 526.2 345 78.8
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.5e-147 525.8 343 77.3
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.5e-147 525.8 343 77.6
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 7.4e-147 524.2 345 77.1
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 7.4e-147 524.2 343 77.3
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 9.6e-147 523.9 343 77.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.3e-146 523.5 343 77.8
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.3e-146 523.5 343 76.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.8e-146 521.5 343 77.6
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.8e-146 521.5 343 77.6
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 6.2e-146 521.2 344 78.2
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.8e-145 519.6 343 76.7
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.1e-145 518.8 343 77.6
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 3.1e-145 518.8 343 77.6
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 4.0e-145 518.5 344 77.3
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 9.0e-145 517.3 343 77.0
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 2.6e-144 515.8 344 76.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.4e-144 515.4 343 77.0
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 7.6e-144 514.2 343 77.6
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 75.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 77.0
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.3e-143 513.5 343 76.1
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.7e-143 513.1 344 76.2
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 76.4
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.8e-143 511.9 344 76.2
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 6.4e-143 511.1 345 78.0
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.4e-142 510.0 343 76.4
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.4e-142 510.0 343 76.7
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 4.2e-142 508.4 343 75.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 4.2e-142 508.4 341 75.4
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 4.2e-142 508.4 343 74.6
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 4.2e-142 508.4 343 75.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.7e-141 505.8 343 75.8
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 7.9e-141 504.2 341 74.8
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.0e-140 503.8 343 74.6
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 2.3e-140 502.7 345 76.5
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 3.9e-140 501.9 343 74.1
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 3.9e-140 501.9 343 73.8
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 5.1e-140 501.5 344 74.1
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 74.1
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 9.6e-139 497.3 346 73.7
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 3.7e-138 495.4 343 73.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.1e-137 493.8 337 74.2
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.4e-137 492.7 343 73.8
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 3.1e-137 492.3 348 73.0
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 6.9e-137 491.1 343 73.2
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.2e-136 490.3 392 66.8
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.6e-136 489.2 343 74.3
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 4.5e-136 488.4 343 70.6
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 1.0e-135 487.3 367 71.7
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.7e-135 486.5 343 71.7
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.9e-135 485.7 335 75.8
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 4.9e-135 485.0 345 72.8
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 6.5e-135 484.6 345 72.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 8.4e-135 484.2 345 72.5
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.4e-134 483.4 343 71.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 3.2e-134 482.3 349 71.3
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 3.2e-134 482.3 346 75.4
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 5.5e-134 481.5 336 70.2
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 7.1e-134 481.1 325 75.1
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.2e-133 480.3 343 70.8
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 6.0e-133 478.0 341 72.4
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.9e-132 475.3 343 70.8
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.9e-131 473.0 356 69.1
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 4.1e-129 465.3 343 71.1
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 3.4e-128 462.2 310 73.9
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.9e-127 459.1 272 84.6
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.1e-126 457.2 413 61.3
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 7.2e-126 454.5 306 75.2
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.2e-125 453.8 306 75.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 6.1e-125 451.4 336 67.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 8.2e-122 441.0 334 70.7
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.8e-121 439.9 344 65.7
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.0e-120 436.4 272 79.4
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 3.8e-119 432.2 306 70.6
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 7.2e-118 427.9 400 60.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-116 423.3 343 65.9
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 3.0e-116 422.5 343 67.3
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.7e-114 416.8 343 64.4
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.8e-114 416.0 293 74.1
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 8.5e-111 404.4 343 63.3
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.1e-110 404.1 416 55.5
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.4e-108 397.1 315 68.9
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-107 394.0 343 62.1
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 6.3e-106 388.3 292 70.5
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 7.7e-104 381.3 222 86.0
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.8e-98 362.8 222 81.5
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 6.3e-98 361.7 343 59.2
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 3.1e-97 359.4 384 52.9
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.2e-96 357.5 202 92.6
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.0e-91 340.1 246 72.4
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.7e-90 335.9 343 55.4
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.3e-90 334.7 204 84.3
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 8.8e-84 314.7 397 51.4
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 8.3e-82 308.1 312 54.2
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.5e-80 302.8 343 50.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 6.1e-77 292.0 249 62.2
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.0e-75 287.0 169 84.0
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.0e-72 276.9 247 60.3
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 3.3e-70 269.6 299 48.8
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.1e-60 238.0 255 53.3
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 2.4e-57 226.9 144 82.6
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 4.6e-56 222.6 163 73.6
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.5e-51 207.6 144 72.2
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.9e-49 200.7 154 64.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.6e-48 197.6 238 50.8
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 3.1e-44 183.3 339 37.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.2e-44 182.6 131 72.5
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.9e-42 176.8 110 78.2
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-41 174.9 182 53.8
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 6.0e-40 169.1 342 33.0
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 3.9e-39 166.4 323 35.0
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 3.3e-38 163.3 312 35.6
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.0e-36 156.4 130 63.1
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.3e-34 151.4 113 73.5
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 6.4e-26 122.5 74 82.4
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 4.0e-20 103.2 73 68.5
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.3e-20 102.8 93 57.0
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 1.7e-18 97.8 104 51.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.5e-18 95.9 95 57.9


User provided reference genes

Program Settings