Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02611 Brassica carinata HOM05D007687 ORTHO05D009692 1.7e-140 502.7 260 100.0
C07p44640 Brassica napus HOM05D007687 ORTHO05D009692 1.7e-140 502.7 260 100.0
BolC7t44987H Brassica oleracea HOM05D007687 ORTHO05D009692 7.3e-139 497.3 260 98.8
BraA03t13781Z Brassica rapa HOM05D007687 ORTHO05D009692 1.4e-126 456.4 262 91.2
BcaC06g33202 Brassica carinata HOM05D007687 ORTHO05D009692 2.9e-119 432.2 261 87.7
A03p46570 Brassica napus HOM05D007687 ORTHO05D009692 5.1e-116 421.4 261 86.2
Thhalv10004801m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 3.2e-102 375.6 261 75.5
Sp2g24190 Schrenkiella parvula HOM05D007687 ORTHO05D009692 3.0e-100 369.0 267 75.7
AL8G37500 Arabidopsis lyrata HOM05D007687 ORTHO05D009692 1.4e-97 360.1 266 73.7
AT5G60880 Arabidopsis thaliana HOM05D007687 ORTHO05D009692 2.9e-95 352.4 264 72.0
BcaC04g23476 Brassica carinata HOM05D007687 ORTHO05D009692 8.4e-79 297.7 262 66.8
BraA09t36360Z Brassica rapa HOM05D007687 ORTHO05D009692 7.1e-78 294.7 262 66.4
BolC9t53708H Brassica oleracea HOM05D007687 ORTHO05D009692 2.7e-77 292.7 262 66.0
CARHR274560 Cardamine hirsuta HOM05D007687 ORTHO05D009692 7.9e-77 291.2 264 64.8
BcaB04g19894 Brassica carinata HOM05D007687 ORTHO05D009692 2.3e-76 289.7 262 66.0
A09p07100 Brassica napus HOM05D007687 ORTHO05D009692 2.3e-76 289.7 263 66.2
C09p07960 Brassica napus HOM05D007687 ORTHO05D009692 9.7e-75 284.3 262 64.9
Thhalv10015806m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 3.8e-71 272.3 263 62.4
Carub.0008s2158 Capsella rubella HOM05D007687 ORTHO05D009692 2.0e-64 250.0 267 58.1
THA.LOC104801051 Tarenaya hassleriana HOM05D007687 ORTHO05D009692 1.8e-52 210.3 271 52.4
Aa31LG11G2410 Aethionema arabicum HOM05D007687 ORTHO05D009692 1.7e-47 193.7 187 59.4
Thecc.03G108300 Theobroma cacao HOM05D007687 ORTHO05D009692 1.5e-30 137.5 285 36.8
QL10p020735 Quercus lobata HOM05D007687 ORTHO05D009692 4.7e-29 132.5 283 34.3
Duzib068G1012 Durio zibethinus HOM05D007687 ORTHO05D009692 1.1e-25 121.3 282 33.0
Sed0010577 Sechium edule HOM05D007687 ORTHO05D009692 1.4e-25 120.9 290 30.7
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 4.1e-25 119.4 297 34.3
Prupe.5G209900 Prunus persica HOM05D007687 ORTHO05D009692 4.1e-25 119.4 274 34.7
Duzib084G0111 Durio zibethinus HOM05D007687 ORTHO05D009692 7.0e-25 118.6 285 33.3
Duzib205G1319 Durio zibethinus HOM05D007687 ORTHO05D009692 1.6e-24 117.5 267 36.7
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 2.3e-23 113.6 270 33.0
C02p61170 Brassica napus HOM05D007687 ORTHO05D033574 2.1e-21 107.1 245 36.3
BolC2t12162H Brassica oleracea HOM05D007687 ORTHO05D033574 2.1e-21 107.1 245 36.3
Oeu044771.1 Olea europaea HOM05D007687 ORTHO05D009692 2.8e-21 106.7 283 33.2
Potri.015G048600 Populus trichocarpa HOM05D007687 ORTHO05D009692 3.6e-21 106.3 278 33.8
Nn4g23535 Nelumbo nucifera HOM05D007687 ORTHO05D009692 8.0e-21 105.1 288 27.1
MD14G1216500 Malus domestica HOM05D007687 ORTHO05D009692 1.0e-20 104.8 336 30.4
Ciclev10024235m.g Citrus clementina HOM05D007687 ORTHO05D009692 6.8e-20 102.1 256 30.5
Manes.14G089000 Manihot esculenta HOM05D007687 ORTHO05D009692 2.6e-19 100.1 280 32.5
Nitab4.5_0002467g0050 Nicotiana tabacum HOM05D007687 ORTHO05D009692 2.4e-17 93.6 293 29.0
CiPaw.15G114100 Carya illinoinensis HOM05D007687 ORTHO05D009692 1.2e-16 91.3 159 40.9
Sabra15G0078700 Salix brachista HOM05D007687 ORTHO05D009692 6.6e-15 85.5 290 31.0
FAN08G0723 Fragaria x ananassa HOM05D007687 ORTHO05D009692 8.6e-15 85.1 297 32.7
Lj4g0013896 Lotus japonicus HOM05D007687 ORTHO05D009692 5.6e-14 82.4 246 28.9
Peaxi162Scf00017g03282 Petunia axillaris HOM05D007687 ORTHO05D009692 9.5e-14 81.6 294 29.6
FvH4_5g13402 Fragaria vesca HOM05D007687 ORTHO05D009692 1.6e-13 80.9 292 29.5
FAN18G0959 Fragaria x ananassa HOM05D007687 ORTHO05D009692 1.6e-13 80.9 292 29.5
Nitab4.5_0005994g0030 Nicotiana tabacum HOM05D007687 ORTHO05D009692 2.1e-13 80.5 272 31.6
Atru.chr4.1593 Acer truncatum HOM05D007687 ORTHO05D009692 4.7e-13 79.3 225 30.2
Cfa016835 Carpinus fangiana HOM05D007687 ORTHO05D009692 4.7e-13 79.3 158 40.5
Glyma.17G081600 Glycine max HOM05D007687 ORTHO05D009692 6.2e-13 79.0 204 33.8
Actinidia10442 Actinidia chinensis HOM05D007687 ORTHO05D009692 8.0e-13 78.6 272 30.9
ClCG04G011570 Citrullus lanatus HOM05D007687 ORTHO05D009692 2.3e-12 77.0 242 29.3
VMungo1215G2041 Vigna mungo HOM05D007687 ORTHO05D009692 3.1e-12 76.6 170 35.9
CAN.G982.38 Capsicum annuum HOM05D007687 ORTHO05D009692 4.0e-12 76.3 297 28.3
Medtr2g461550 Medicago truncatula HOM05D007687 ORTHO05D009692 2.0e-11 73.9 172 35.5
BraA02t09067Z Brassica rapa HOM05D007687 ORTHO05D033574 3.4e-11 73.2 71 59.2
Phvul.003G182300 Phaseolus vulgaris HOM05D007687 ORTHO05D009692 9.8e-11 71.6 182 34.1
Cc04_g08290 Coffea canephora HOM05D007687 ORTHO05D009692 2.2e-10 70.5 273 26.0
TWI60G1328 Tripterygium wilfordii HOM05D007687 ORTHO05D009692 1.1e-09 68.2 251 27.1
CsaV3_1G006250 Cucumis sativus L. HOM05D007687 ORTHO05D009692 1.4e-09 67.8 197 31.0
Dinv07975 Davidia involucrata HOM05D007687 ORTHO05D009692 1.9e-09 67.4 157 31.2
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 2.4e-09 67.0 158 38.0
Sopen03g033850 Solanum pennellii HOM05D007687 ORTHO05D009692 2.4e-09 67.0 265 26.8
Solyc03g114770.3 Solanum lycopersicum HOM05D007687 ORTHO05D009692 4.1e-09 66.2 265 26.8
CANSAT56G1485 Cannabis sativa HOM05D007687 ORTHO05D009692 9.2e-09 65.1 173 34.7
Gorai.006G268500 Gossypium raimondii HOM05D007687 ORTHO05D009692 9.2e-09 65.1 254 29.5
Gohir.A09G243800 Gossypium hirsutum HOM05D007687 ORTHO05D009692 1.6e-08 64.3 244 30.3
CANSAT56G0292 Cannabis sativa HOM05D007687 ORTHO05D009692 2.1e-08 63.9 173 34.7
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 3.5e-08 63.2 184 30.4
A02p41240 Brassica napus HOM05D007687 ORTHO05D009692 4.6e-08 62.8 29 93.1
Aqoxy7G00617 Aquilegia oxysepala HOM05D035011 ORTHO05D031291 1.0e-07 61.6 149 30.9
Glyma.05G018400 Glycine max HOM05D007687 ORTHO05D009692 1.0e-07 61.6 244 29.9
SGA_v2.0_scaffold105G30431 Striga asiatica HOM05D007687 ORTHO05D009692 1.7e-07 60.8 258 26.0
Manes.06G080900 Manihot esculenta HOM05D007687 ORTHO05D009692 1.9e-06 57.4 181 29.8
PGSC0003DMG400024621 Solanum tuberosum HOM05D007687 ORTHO05D009692 2.5e-06 57.0 163 30.7
PSO063G2070 Papaver somniferum HOM05D035011 ORTHO05D031291 5.6e-06 55.8 233 26.6
Dinv17458 Davidia involucrata HOM05D007687 ORTHO05D009692 7.3e-06 55.5 179 29.1
Lsat_1_v5_gn_4_113740 Lactuca sativa HOM05D007687 ORTHO05D009692 9.5e-06 55.1 253 27.7


User provided reference genes

Program Settings