Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.3e-247 859.8 606 100.0
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 3.4e-224 781.9 613 86.0
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 3.7e-178 629.0 613 79.6
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 6.6e-175 618.2 624 68.8
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.4e-163 579.3 611 79.1
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 7.1e-145 518.5 631 59.7
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 6.6e-143 511.9 631 63.7
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.6e-141 507.3 630 59.7
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.9e-129 467.2 611 66.0
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.8e-127 460.7 631 62.4
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.2e-107 394.8 633 49.4
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.5e-107 392.9 631 54.2
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.6e-72 278.1 635 39.2
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 9.8e-70 268.9 637 36.9
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 2.4e-68 264.2 630 41.1
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.4e-63 248.4 636 38.5
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 9.8e-62 242.3 636 41.4
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.8e-55 221.5 630 38.3
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 3.9e-50 203.8 606 33.7
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 3.9e-50 203.8 606 33.7
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 1.9e-44 184.9 607 38.2
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 6.0e-43 179.9 610 33.3
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.9e-42 177.2 629 35.3
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 8.6e-42 176.0 627 30.9
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 4.7e-40 170.2 630 34.0
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 6.2e-40 169.9 643 31.4
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 4.9e-37 160.2 624 34.6
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 2.1e-35 154.8 647 37.2
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 4.6e-35 153.7 623 27.9
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 7.8e-35 152.9 640 37.0
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 2.3e-34 151.4 652 32.8
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.5e-33 148.7 668 26.6
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.5e-33 147.9 641 28.9
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 9.6e-33 146.0 640 39.8
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.4e-28 132.1 627 36.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.9e-28 131.7 580 30.3
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.4e-28 131.3 635 28.7
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 7.1e-28 129.8 247 36.4
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 9.3e-28 129.4 265 37.0
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.2e-27 129.0 599 29.2
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 8.7e-26 122.9 588 37.1
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.1e-25 122.5 628 27.2
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 1.5e-25 122.1 600 37.7
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 1.5e-25 122.1 567 25.6
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.3e-25 120.9 665 31.1
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 2.1e-24 118.2 631 24.7
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 2.8e-24 117.9 638 25.1
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.4e-23 115.5 647 24.0
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.4e-23 115.5 636 32.9
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.2e-22 112.5 665 24.4
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.6e-22 111.3 665 24.2
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 9.9e-22 109.4 663 22.8
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 1.3e-21 109.0 656 27.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.7e-21 108.6 571 38.2
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.8e-21 107.5 200 35.0
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 8.4e-21 106.3 268 32.8
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 8.4e-21 106.3 268 32.8
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.4e-20 104.8 576 29.9
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 7.1e-20 103.2 266 30.8
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.6e-19 102.1 659 24.6
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 2.3e-18 98.2 554 23.1
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 2.3e-18 98.2 247 35.6
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.0e-18 97.8 624 30.3
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 5.1e-18 97.1 629 39.1
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 5.1e-18 97.1 754 25.2
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 6.7e-18 96.7 597 22.1
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 1.9e-17 95.1 654 35.6
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 4.3e-17 94.0 637 27.8
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 9.6e-17 92.8 642 32.1
BcaNung04360 Brassica carinata HOM05D004923 ORTHO05D005940 1.6e-16 92.0 76 80.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 4.8e-16 90.5 207 34.8
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 4.8e-16 90.5 630 33.5
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 1.1e-15 89.4 667 29.1
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.4e-15 89.0 599 27.4
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.8e-15 88.6 645 25.4
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 2.4e-15 88.2 680 24.7
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.3e-15 87.0 586 34.5
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.5e-14 85.5 617 25.4
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.0e-14 85.1 661 31.3
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.0e-14 85.1 142 39.4
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 5.8e-14 83.6 232 28.4
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.3e-13 82.4 212 30.2
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 3.8e-13 80.9 661 31.8
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 3.8e-13 80.9 579 31.6
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 4.9e-13 80.5 132 39.4
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 8.4e-13 79.7 126 38.1
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 8.4e-13 79.7 137 35.8
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 8.4e-13 79.7 640 24.1
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-12 79.0 612 31.4
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.9e-12 78.6 600 23.5
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 3.2e-12 77.8 252 32.9
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.2e-12 77.4 579 24.4
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 4.2e-12 77.4 126 37.3
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 4.2e-12 77.4 132 38.6
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 5.5e-12 77.0 632 27.1
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 9.3e-12 76.3 649 24.2
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.6e-11 75.5 607 26.0
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.7e-11 74.7 599 22.4
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 2.7e-11 74.7 596 30.5
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 2.7e-11 74.7 124 34.7
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 3.5e-11 74.3 122 46.7
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 4.6e-11 73.9 636 26.7
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 4.6e-11 73.9 665 23.9
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 3.0e-10 71.2 609 27.6
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 5.1e-10 70.5 602 24.9
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 6.7e-10 70.1 136 32.4
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 8.7e-10 69.7 194 33.0
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 8.7e-10 69.7 136 33.8
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 4.3e-09 67.4 104 40.4
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 7.4e-09 66.6 608 21.4
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.3e-08 65.9 586 30.5
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 1.6e-08 65.5 139 32.4
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 2.1e-08 65.1 663 25.3
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 2.8e-08 64.7 284 24.6
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 2.8e-08 64.7 284 24.6
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 4.8e-08 63.9 593 31.9
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.1e-07 62.8 715 22.4
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 3.1e-07 61.2 280 26.1
Actinidia08545 Actinidia chinensis HOM05D004923 ORTHO05D005940 9.0e-07 59.7 84 41.7
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 9.0e-07 59.7 104 44.2
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 9.0e-07 59.7 591 32.0
Actinidia00480 Actinidia chinensis HOM05D001349 ORTHO05D005940 1.2e-06 59.3 84 40.5
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.5e-06 58.9 684 27.5
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.0e-06 58.5 279 30.5
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.0e-06 58.5 603 32.8
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 7.6e-06 56.6 122 34.4
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 7.6e-06 56.6 87 41.4


User provided reference genes

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