Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 2.9e-137 491.9 251 100.0
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 1.4e-131 473.0 261 95.0
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 2.4e-131 472.2 263 94.7
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 2.4e-131 472.2 263 94.7
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 2.3e-129 465.7 249 96.0
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 6.2e-119 431.0 251 88.8
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 8.9e-118 427.2 249 88.8
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 6.4e-116 421.0 238 92.4
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 5.2e-110 401.4 249 83.1
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 1.4e-107 393.3 249 80.7
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 7.1e-107 391.0 249 81.1
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 7.8e-106 387.5 249 79.9
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 2.7e-98 362.5 250 74.0
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 7.3e-96 354.4 274 70.4
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 4.8e-87 325.1 249 66.7
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 3.4e-85 318.9 249 65.5
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 7.6e-85 317.8 245 66.5
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 9.9e-85 317.4 253 66.4
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 1.3e-84 317.0 241 66.0
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 1.7e-84 316.6 250 65.6
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 2.2e-84 316.2 249 65.9
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 3.8e-84 315.5 252 65.1
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 2.1e-82 309.7 251 65.7
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 2.1e-82 309.7 249 62.7
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.7e-82 309.3 247 66.0
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 2.7e-82 309.3 251 64.1
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 4.6e-82 308.5 245 65.3
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 7.9e-82 307.8 252 65.1
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 1.8e-81 306.6 245 64.1
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 1.8e-81 306.6 249 63.5
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 2.3e-81 306.2 251 65.3
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 3.9e-81 305.4 253 64.0
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 5.6e-80 301.6 251 64.5
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 7.4e-80 301.2 253 63.6
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.6e-79 300.1 249 63.1
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 2.1e-79 299.7 249 63.1
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.4e-78 297.0 249 59.8
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.8e-78 296.6 249 61.4
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.8e-78 296.6 249 61.4
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 3.1e-78 295.8 210 69.5
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 4.0e-78 295.4 255 59.2
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 6.9e-78 294.7 220 68.2
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 1.2e-77 293.9 236 62.7
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.2e-77 293.9 250 61.2
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 1.5e-77 293.5 255 60.0
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 3.4e-77 292.4 231 65.4
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 4.5e-77 292.0 256 62.9
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 1.7e-76 290.0 251 62.2
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 1.7e-76 290.0 253 61.7
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 2.9e-76 289.3 248 62.1
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 4.9e-76 288.5 257 62.6
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 4.9e-76 288.5 261 59.8
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 1.9e-75 286.6 249 60.6
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.1e-74 283.1 234 60.3
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 2.1e-74 283.1 234 60.3
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.5e-74 282.3 267 58.4
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 7.9e-74 281.2 251 57.8
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 1.0e-73 280.8 243 60.9
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 2.3e-73 279.6 238 63.0
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 3.0e-73 279.3 252 60.7
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 3.9e-73 278.9 273 57.9
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 5.1e-73 278.5 245 61.6
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 6.7e-73 278.1 246 59.8
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 8.7e-73 277.7 249 59.8
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 1.1e-72 277.3 251 57.0
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 1.5e-72 276.9 244 59.8
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 1.9e-72 276.6 257 59.5
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 3.3e-72 275.8 244 59.4
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 9.6e-72 274.2 198 68.7
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.1e-71 273.1 293 53.9
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 2.8e-71 272.7 251 58.2
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 1.1e-70 270.8 169 76.3
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 2.4e-70 269.6 250 58.8
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 2.4e-70 269.6 243 60.5
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 6.9e-70 268.1 215 61.9
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 1.2e-69 267.3 252 55.6
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 2.0e-69 266.5 241 58.5
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 7.6e-69 264.6 169 73.4
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 7.6e-69 264.6 254 56.7
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 1.0e-68 264.2 252 55.2
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 2.2e-68 263.1 220 60.9
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 2.9e-68 262.7 160 75.6
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 6.5e-68 261.5 182 69.2
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 6.5e-68 261.5 261 57.5
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 2.1e-66 256.5 252 55.2
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 4.6e-66 255.4 251 54.6
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 6.1e-66 255.0 250 54.8
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 1.3e-65 253.8 250 53.6
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 3.9e-65 252.3 255 54.5
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 3.3e-64 249.2 183 65.6
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 6.3e-63 245.0 211 58.3
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 6.3e-63 245.0 250 54.0
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 6.3e-63 245.0 250 53.2
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.4e-62 243.0 201 59.7
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 3.4e-61 239.2 251 51.8
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 1.7e-60 236.9 208 57.7
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 5.0e-60 235.3 219 54.8
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 1.6e-58 230.3 175 62.9
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 2.7e-58 229.6 211 53.1
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 2.7e-58 229.6 142 78.2
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 7.9e-58 228.0 253 49.0
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 1.4e-57 227.3 142 79.6
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 7.7e-53 211.5 173 61.8
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 3.6e-50 202.6 183 61.7
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 2.6e-45 186.4 190 48.9
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.0e-44 184.5 241 47.3
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 3.2e-43 179.5 157 54.8
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 1.4e-41 174.1 131 63.4
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 3.7e-39 166.0 167 56.3
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.1e-38 164.5 180 44.4
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 1.4e-38 164.1 175 45.1
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 6.5e-36 155.2 163 47.9
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 3.2e-35 152.9 155 58.1
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 2.7e-34 149.8 151 58.9
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 1.2e-32 144.4 93 71.0
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.8e-31 139.8 140 57.1
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 2.0e-21 107.1 94 55.3
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 1.3e-20 104.4 68 70.6
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 2.9e-15 86.7 132 35.6
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 3.0e-12 76.6 204 26.5
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 6.6e-12 75.5 177 27.7
PRCOL_00002748 Prasinoderma coloniale HOM05D006710 ORTHO05D008353 5.2e-09 65.9 138 32.6


User provided reference genes

Program Settings