Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02462 Brassica carinata HOM05D000503 ORTHO05D031942 1.2e-58 229.6 111 100.0
BolC7t44602H Brassica oleracea HOM05D000503 ORTHO05D031942 7.3e-40 167.2 81 98.8
C07p40740 Brassica napus HOM05D000503 ORTHO05D031942 1.5e-37 159.5 81 93.8
BcaC07g40052 Brassica carinata HOM05D000503 ORTHO05D000361 5.7e-16 87.8 97 53.6
BolC8t50851H Brassica oleracea HOM05D000503 ORTHO05D000361 9.7e-16 87.0 97 54.6
BcaC07g40083 Brassica carinata HOM05D000503 ORTHO05D000361 1.3e-15 86.7 97 53.6
C08p32370 Brassica napus HOM05D000503 ORTHO05D000361 5.3e-14 81.3 97 51.5
A09p49960 Brassica napus HOM05D000503 ORTHO05D000361 1.2e-13 80.1 95 52.6
BraA09t40446Z Brassica rapa HOM05D000503 ORTHO05D000361 2.0e-13 79.3 100 50.0
BcaB02g07624 Brassica carinata HOM05D000503 ORTHO05D000361 2.5e-11 72.4 96 50.0
BcaB02g08333 Brassica carinata HOM05D000503 ORTHO05D000361 3.2e-11 72.0 60 65.0
BcaC08g44821 Brassica carinata HOM05D000503 ORTHO05D000361 5.5e-11 71.2 101 46.5
A07p23220 Brassica napus HOM05D000503 ORTHO05D000361 5.5e-11 71.2 101 46.5
BolC6t37569H Brassica oleracea HOM05D000503 ORTHO05D000361 5.5e-11 71.2 101 46.5
BraA07t29986Z Brassica rapa HOM05D000503 ORTHO05D000361 5.5e-11 71.2 101 46.5
Carub.0005s2384 Capsella rubella HOM05D000503 ORTHO05D000361 5.5e-11 71.2 93 50.5
Sp5g05540 Schrenkiella parvula HOM05D000503 ORTHO05D000361 5.5e-11 71.2 99 49.5
AL5G38520 Arabidopsis lyrata HOM05D000503 ORTHO05D000361 9.4e-11 70.5 99 48.5
Glyma.03G130000 Glycine max HOM05D000503 ORTHO05D000361 4.6e-10 68.2 98 45.9
AT3G57040 Arabidopsis thaliana HOM05D000503 ORTHO05D000361 6.1e-10 67.8 99 46.5
CARHR167230 Cardamine hirsuta HOM05D000503 ORTHO05D000361 1.0e-09 67.0 99 48.5
Thhalv10006209m.g Eutrema salsugineum HOM05D000503 ORTHO05D000361 1.0e-09 67.0 99 47.5
C06p24100 Brassica napus HOM05D000503 ORTHO05D000361 1.4e-09 66.6 101 45.5
Aa31LG10G11960 Aethionema arabicum HOM05D000503 ORTHO05D000361 1.8e-09 66.2 94 47.9
Peaxi162Scf00970g00159 Petunia axillaris HOM05D000503 ORTHO05D000361 2.3e-09 65.9 99 46.5
Solyc10g079700.2 Solanum lycopersicum HOM05D000503 ORTHO05D000361 3.0e-09 65.5 98 44.9
Sopen10g030330 Solanum pennellii HOM05D000503 ORTHO05D000361 3.0e-09 65.5 98 44.9
PGSC0003DMG400029852 Solanum tuberosum HOM05D000503 ORTHO05D000361 3.0e-09 65.5 98 44.9
BcaC02g09898 Brassica carinata HOM05D000503 ORTHO05D000361 3.9e-09 65.1 100 46.0
C04p35410 Brassica napus HOM05D000503 ORTHO05D000361 3.9e-09 65.1 100 46.0
VMungo1383G0176 Vigna mungo HOM05D000503 ORTHO05D000361 5.1e-09 64.7 98 43.9
A04p03770 Brassica napus HOM05D000503 ORTHO05D000361 6.7e-09 64.3 97 46.4
BolC4t25095H Brassica oleracea HOM05D000503 ORTHO05D000361 6.7e-09 64.3 101 47.5
BraA04t16057Z Brassica rapa HOM05D000503 ORTHO05D000361 1.1e-08 63.5 98 48.0
Peaxi162Scf01378g00113 Petunia axillaris HOM05D000503 ORTHO05D000361 1.5e-08 63.2 98 45.9
TWI77G0159 Tripterygium wilfordii HOM05D000503 ORTHO05D000361 1.5e-08 63.2 100 44.0
Migut.J01671 Erythranthe guttata HOM05D000503 ORTHO05D000361 1.9e-08 62.8 97 44.3
Lj1g0019360 Lotus japonicus HOM05D000503 ORTHO05D000361 1.9e-08 62.8 96 42.7
SalBow6G1000 Salvia bowleyana HOM05D000503 ORTHO05D000361 1.9e-08 62.8 96 43.8
FAN06G3420 Fragaria x ananassa HOM05D000503 ORTHO05D000361 2.5e-08 62.4 99 39.4
THA.LOC104824409 Tarenaya hassleriana HOM05D000503 ORTHO05D000361 2.5e-08 62.4 93 46.2
MSTRG.19815 Avicennia marina HOM05D000503 ORTHO05D000361 3.3e-08 62.0 96 43.8
Eucgr.K01639 Eucalyptus grandis HOM05D000503 ORTHO05D000361 4.3e-08 61.6 98 41.8
Glyma.19G132300 Glycine max HOM05D000503 ORTHO05D000361 4.3e-08 61.6 92 45.7
TWI34G0040 Tripterygium wilfordii HOM05D000503 ORTHO05D000361 4.3e-08 61.6 105 42.9
THA.LOC104803268 Tarenaya hassleriana HOM05D000503 ORTHO05D000361 5.7e-08 61.2 103 43.7
A04p31480 Brassica napus HOM05D000503 ORTHO05D000361 7.4e-08 60.8 99 43.4
C04p68890 Brassica napus HOM05D000503 ORTHO05D000361 7.4e-08 60.8 99 43.4
BolC4t28392H Brassica oleracea HOM05D000503 ORTHO05D000361 7.4e-08 60.8 99 43.4
BraA04t18605Z Brassica rapa HOM05D000503 ORTHO05D000361 7.4e-08 60.8 99 43.4
CANSAT64G1151 Cannabis sativa HOM05D000503 ORTHO05D000361 7.4e-08 60.8 97 42.3
Nitab4.5_0001364g0020 Nicotiana tabacum HOM05D000503 ORTHO05D000361 7.4e-08 60.8 60 58.3
Prupe.7G041600 Prunus persica HOM05D000503 ORTHO05D000361 7.4e-08 60.8 96 44.8
Duzib093G1159 Durio zibethinus HOM05D000503 ORTHO05D000361 9.7e-08 60.5 98 44.9
FAN03G2593 Fragaria x ananassa HOM05D000503 ORTHO05D000361 9.7e-08 60.5 99 38.4
Nitab4.5_0000571g0150 Nicotiana tabacum HOM05D000503 ORTHO05D000361 9.7e-08 60.5 60 58.3
SGA_v2.0_scaffold69G23144 Striga asiatica HOM05D000503 ORTHO05D000361 9.7e-08 60.5 95 45.3
BcaC02g12891 Brassica carinata HOM05D000503 ORTHO05D000361 1.3e-07 60.1 95 44.2
Oeu063775.1 Olea europaea HOM05D000503 ORTHO05D000361 1.3e-07 60.1 96 41.7
BcaB01g03474 Brassica carinata HOM05D000503 ORTHO05D000361 1.7e-07 59.7 96 44.8
Ca_27642_v3 Cicer arietinum L. HOM05D000503 ORTHO05D000361 1.7e-07 59.7 94 43.6
Lj7C584T1 Lonicera japonica HOM05D000503 ORTHO05D000361 1.7e-07 59.7 100 39.0
PGSC0003DMG400029839 Solanum tuberosum HOM05D000503 ORTHO05D000361 1.7e-07 59.7 96 39.6
CsaV3_3G040330 Cucumis sativus L. HOM05D000503 ORTHO05D000361 2.2e-07 59.3 103 41.7
DCAR_020555 Daucus carota HOM05D000503 ORTHO05D000361 2.2e-07 59.3 98 42.9
Manes.09G006800 Manihot esculenta HOM05D000503 ORTHO05D000361 2.2e-07 59.3 92 43.5
RcHm_v2.0_Chr1g0323961 Rosa chinensis HOM05D000503 ORTHO05D000361 2.2e-07 59.3 99 38.4
arahy.Tifrunner.gnm1.ann1.04TCW6 Arachis hypogaea HOM05D000503 ORTHO05D000361 2.8e-07 58.9 104 44.2
arahy.Tifrunner.gnm1.ann1.E2UI1Z Arachis hypogaea HOM05D000503 ORTHO05D000361 2.8e-07 58.9 104 44.2
Haze_20200 Corylus avellana HOM05D000503 ORTHO05D000361 2.8e-07 58.9 92 42.4
Dinv03153 Davidia involucrata HOM05D000503 ORTHO05D000361 2.8e-07 58.9 97 40.2
MD12G1093500 Malus domestica HOM05D000503 ORTHO05D000361 2.8e-07 58.9 99 42.4
TWI74G1431 Tripterygium wilfordii HOM05D000503 ORTHO05D000361 2.8e-07 58.9 100 42.0
Atru.chr1.1498 Acer truncatum HOM05D000503 ORTHO05D000361 3.7e-07 58.5 102 38.2
FvH4_7g02970 Fragaria vesca HOM05D000503 ORTHO05D000361 3.7e-07 58.5 99 38.4
Oeu008213.1 Olea europaea HOM05D000503 ORTHO05D000361 3.7e-07 58.5 96 42.7
TPR.G27849 Trifolium pratense HOM05D000503 ORTHO05D000361 3.7e-07 58.5 96 42.7
HPP92_012096 Vanilla planifolia HOM05D000503 ORTHO05D000361 3.7e-07 58.5 87 43.7
A03p23200 Brassica napus HOM05D000503 ORTHO05D000361 4.8e-07 58.2 96 43.8
Gohir.D13G004300 Gossypium hirsutum HOM05D000503 ORTHO05D000361 4.8e-07 58.2 92 42.4
Phvul.001G125800 Phaseolus vulgaris HOM05D000503 ORTHO05D000361 4.8e-07 58.2 95 42.1
Sp4g23610 Schrenkiella parvula HOM05D000503 ORTHO05D000361 4.8e-07 58.2 95 44.2
BcaC01g05344 Brassica carinata HOM05D000503 ORTHO05D000361 6.3e-07 57.8 96 42.7
C03p27700 Brassica napus HOM05D000503 ORTHO05D000361 6.3e-07 57.8 96 42.7
BraA03t11540Z Brassica rapa HOM05D000503 ORTHO05D000361 6.3e-07 57.8 100 43.0
HanXRQChr01g0009321 Helianthus annuus HOM05D000503 ORTHO05D000361 6.3e-07 57.8 100 45.0
Medtr7g490310 Medicago truncatula HOM05D000503 ORTHO05D000361 6.3e-07 57.8 92 42.4
Nitab4.5_0002208g0100 Nicotiana tabacum HOM05D000503 ORTHO05D000361 6.3e-07 57.8 53 60.4
Peaxi162Scf01029g00212 Petunia axillaris HOM05D000503 ORTHO05D000361 6.3e-07 57.8 62 54.8
Potri.016G038000 Populus trichocarpa HOM05D000503 ORTHO05D000361 6.3e-07 57.8 90 43.3
SGA_v2.0_scaffold105G30302 Striga asiatica HOM05D000503 ORTHO05D000361 6.3e-07 57.8 95 43.2
AT2G41310 Arabidopsis thaliana HOM05D000503 ORTHO05D000361 8.2e-07 57.4 95 45.3
MSTRG.10794 Avicennia marina HOM05D000503 ORTHO05D000361 8.2e-07 57.4 101 42.6
Cfa020021 Carpinus fangiana HOM05D000503 ORTHO05D000361 8.2e-07 57.4 92 41.3
Lalb_Chr01g0017191 Lupinus albus HOM05D000503 ORTHO05D000361 8.2e-07 57.4 99 42.4
Nn7g36663 Nelumbo nucifera HOM05D000503 ORTHO05D000361 8.2e-07 57.4 92 44.6
MSTRG.6378 Avicennia marina HOM05D000503 ORTHO05D000361 1.1e-06 57.0 100 43.0
CiPaw.10G039200 Carya illinoinensis HOM05D000503 ORTHO05D000361 1.1e-06 57.0 96 40.6
Cc06_g18920 Coffea canephora HOM05D000503 ORTHO05D000361 1.1e-06 57.0 97 39.2
Eucgr.G03236 Eucalyptus grandis HOM05D000503 ORTHO05D000361 1.1e-06 57.0 104 40.4
MD14G1086100 Malus domestica HOM05D000503 ORTHO05D000361 1.1e-06 57.0 98 39.8
Manes.08G058200 Manihot esculenta HOM05D000503 ORTHO05D000361 1.1e-06 57.0 86 46.5
PGR031G2651 Punica granatum HOM05D000503 ORTHO05D000361 1.1e-06 57.0 53 56.6
Solyc10g079600.2 Solanum lycopersicum HOM05D000503 ORTHO05D000361 1.1e-06 57.0 96 39.6
Sopen10g030240 Solanum pennellii HOM05D000503 ORTHO05D000361 1.1e-06 57.0 96 39.6
BolC3t15140H Brassica oleracea HOM05D000503 ORTHO05D000361 1.4e-06 56.6 88 42.0
Ca_08408_v3 Cicer arietinum L. HOM05D000503 ORTHO05D000361 1.4e-06 56.6 96 41.7
Ciclev10021937m.g Citrus clementina HOM05D000503 ORTHO05D000361 1.4e-06 56.6 97 43.3
Migut.B01224 Erythranthe guttata HOM05D000503 ORTHO05D000361 1.4e-06 56.6 88 43.2
Gohir.A13G004600 Gossypium hirsutum HOM05D000503 ORTHO05D000361 1.4e-06 56.6 92 41.3
Gorai.013G004700 Gossypium raimondii HOM05D000503 ORTHO05D000361 1.4e-06 56.6 92 41.3
Oeu006793.1 Olea europaea HOM05D000503 ORTHO05D000361 1.4e-06 56.6 98 39.8
Psat0s1409g0120 Pisum sativum HOM05D000503 ORTHO05D000361 1.4e-06 56.6 99 41.4
HPP92_006723 Vanilla planifolia HOM05D000503 ORTHO05D000361 1.4e-06 56.6 87 46.0
Ah.13g076930 Amaranthus hybridus HOM05D000503 ORTHO05D000361 1.8e-06 56.2 86 46.5
C06p28570 Brassica napus HOM05D044350 ORTHO05D040272 1.8e-06 56.2 58 56.9
Cpa.g.sc5.212 Carica papaya HOM05D000503 ORTHO05D000361 1.8e-06 56.2 53 56.6
CDE08G1112 Ceratophyllum demersum HOM05D000503 ORTHO05D000361 1.8e-06 56.2 94 42.6
DCAR_016877 Daucus carota HOM05D000503 ORTHO05D000361 1.8e-06 56.2 97 40.2
Migut.K00131 Erythranthe guttata HOM05D000503 ORTHO05D000361 1.8e-06 56.2 92 45.7
Nitab4.5_0000515g0030 Nicotiana tabacum HOM05D000503 ORTHO05D000361 1.8e-06 56.2 53 56.6
PSO384G1302 Papaver somniferum HOM05D000503 ORTHO05D000361 1.8e-06 56.2 99 38.4
Rhsim07G0067000 Rhododendron simsii HOM05D000503 ORTHO05D000361 1.8e-06 56.2 55 58.2
RcHm_v2.0_Chr2g0125351 Rosa chinensis HOM05D000503 ORTHO05D000361 1.8e-06 56.2 94 41.5
Aa31LG3G720 Aethionema arabicum HOM05D000503 ORTHO05D000361 2.4e-06 55.8 97 46.4
DCAR_005494 Daucus carota HOM05D000503 ORTHO05D000361 2.4e-06 55.8 97 41.2
Duzib128G1409 Durio zibethinus HOM05D000503 ORTHO05D000361 2.4e-06 55.8 92 42.4
Eucgr.L03582 Eucalyptus grandis HOM05D000503 ORTHO05D000361 2.4e-06 55.8 104 39.4
Gorai.012G017600 Gossypium raimondii HOM05D000503 ORTHO05D000361 2.4e-06 55.8 102 40.2
Lsat_1_v5_gn_5_159621 Lactuca sativa HOM05D000503 ORTHO05D000361 2.4e-06 55.8 98 41.8
Manes.04G159800 Manihot esculenta HOM05D000503 ORTHO05D000361 2.4e-06 55.8 103 40.8
Nn2g14858 Nelumbo nucifera HOM05D000503 ORTHO05D000361 2.4e-06 55.8 92 43.5
SalBow1G1011 Salvia bowleyana HOM05D000503 ORTHO05D000361 2.4e-06 55.8 98 42.9
SalBow1G8014 Salvia bowleyana HOM05D000503 ORTHO05D000361 2.4e-06 55.8 98 42.9
THA.LOC104819133 Tarenaya hassleriana HOM05D000503 ORTHO05D000361 2.4e-06 55.8 104 42.3
AL4G39290 Arabidopsis lyrata HOM05D000503 ORTHO05D000361 3.1e-06 55.5 95 44.2
BcaNung05677 Brassica carinata HOM05D000503 ORTHO05D000361 3.1e-06 55.5 86 48.8
Thhalv10017200m.g Eutrema salsugineum HOM05D000503 ORTHO05D000361 3.1e-06 55.5 98 39.8
Gohir.A05G400700 Gossypium hirsutum HOM05D000503 ORTHO05D000361 3.1e-06 55.5 102 40.2
Gohir.D04G015100 Gossypium hirsutum HOM05D000503 ORTHO05D000361 3.1e-06 55.5 102 40.2
Hma1.2p1_2759F.1_g328060 Hydrangea macrophylla HOM05D000503 ORTHO05D000361 3.1e-06 55.5 106 39.6
Potri.T124806 Populus trichocarpa HOM05D000503 ORTHO05D000361 3.1e-06 55.5 100 40.0
Rhsim04G0110800 Rhododendron simsii HOM05D000503 ORTHO05D000361 3.1e-06 55.5 97 41.2
Actinidia09268 Actinidia chinensis HOM05D000503 ORTHO05D000361 4.1e-06 55.1 100 42.0
Aqoxy1G00354 Aquilegia oxysepala HOM05D000503 ORTHO05D000361 4.1e-06 55.1 94 40.4
CARHR136400 Cardamine hirsuta HOM05D000503 ORTHO05D000361 4.1e-06 55.1 94 45.7
MELO3C009770.2 Cucumis melo HOM05D000503 ORTHO05D000361 4.1e-06 55.1 103 39.8
Potri.003G197466 Populus trichocarpa HOM05D000503 ORTHO05D000361 4.1e-06 55.1 100 40.0
QL07p008906 Quercus lobata HOM05D000503 ORTHO05D000361 4.1e-06 55.1 94 42.6
PGSC0003DMG400002945 Solanum tuberosum HOM05D000503 ORTHO05D000361 4.1e-06 55.1 97 38.1
CSS0050314 Camellia sinensis var. sinensis HOM05D000503 ORTHO05D000361 5.3e-06 54.7 93 38.7
Duzib128G0364 Durio zibethinus HOM05D000503 ORTHO05D000361 5.3e-06 54.7 98 39.8
MBI19_g44501_MAGBIO Magnolia biondii HOM05D000503 ORTHO05D000361 5.3e-06 54.7 88 40.9
PGR142G4339 Punica granatum HOM05D000503 ORTHO05D000361 5.3e-06 54.7 99 41.4
SEGI_03632 Sequoiadendron giganteum HOM05D000503 ORTHO05D000361 5.3e-06 54.7 86 41.9
HPP92_013973 Vanilla planifolia HOM05D000503 ORTHO05D000361 5.3e-06 54.7 88 44.3
EL10Ac3g07201 Beta vulgaris HOM05D000503 ORTHO05D000361 6.9e-06 54.3 84 45.2
Dinv02826 Davidia involucrata HOM05D000503 ORTHO05D000361 6.9e-06 54.3 89 42.7
Duzib114G0639 Durio zibethinus HOM05D000503 ORTHO05D000361 6.9e-06 54.3 66 48.5
Manes.11G004900 Manihot esculenta HOM05D000503 ORTHO05D000361 6.9e-06 54.3 96 40.6
Oeu023038.1 Olea europaea HOM05D000503 ORTHO05D000361 6.9e-06 54.3 101 39.6
Potri.006G041100 Populus trichocarpa HOM05D000503 ORTHO05D000361 6.9e-06 54.3 90 40.0
SalBow5G1514 Salvia bowleyana HOM05D000503 ORTHO05D000361 6.9e-06 54.3 97 41.2
vmacro09027 Vaccinium macrocarpon HOM05D000503 ORTHO05D000361 6.9e-06 54.3 98 39.8
CiPaw.14G007300 Carya illinoinensis HOM05D000503 ORTHO05D000361 9.1e-06 53.9 99 38.4
Lalb_Chr20g0110171 Lupinus albus HOM05D000503 ORTHO05D000361 9.1e-06 53.9 59 50.8
Sabra03G0146900 Salix brachista HOM05D000503 ORTHO05D000361 9.1e-06 53.9 96 41.7
Sabra06G0027900 Salix brachista HOM05D000503 ORTHO05D000361 9.1e-06 53.9 90 40.0
Sed0020488 Sechium edule HOM05D000503 ORTHO05D000361 9.1e-06 53.9 97 39.2


User provided reference genes

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