Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 6.3e-261 903.7 489 100.0
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-206 723.4 511 81.2
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 6.4e-205 717.6 509 81.3
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 1.0e-194 683.7 508 79.3
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 4.8e-192 674.9 508 79.7
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 4.5e-190 668.3 508 78.9
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.3e-160 570.5 524 67.7
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 8.2e-160 567.8 520 66.9
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 5.3e-159 565.1 514 68.1
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 5.0e-157 558.5 509 68.4
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.4e-138 497.3 515 62.5
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 8.8e-138 494.6 513 62.8
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.1e-83 313.9 555 43.4
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 8.1e-83 312.0 611 42.1
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 2.9e-64 250.4 576 39.9
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 5.1e-61 239.6 558 37.8
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.5e-60 238.0 596 38.6
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 4.8e-59 233.0 603 37.6
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.1e-58 231.9 592 38.0
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 4.2e-55 219.9 613 34.4
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 2.1e-54 217.6 520 38.7
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 6.1e-54 216.1 624 33.0
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.7e-51 208.0 611 33.6
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.4e-50 204.9 617 33.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 2.0e-49 201.1 627 34.3
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 5.9e-49 199.5 629 32.8
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 1.0e-48 198.7 646 33.6
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.4e-47 194.9 641 32.9
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 7.2e-47 192.6 642 34.0
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 3.0e-45 187.2 617 31.9
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 6.7e-45 186.0 577 32.9
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.1e-44 185.3 643 32.2
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 2.8e-43 180.6 551 34.3
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 2.8e-43 180.6 605 31.9
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 4.1e-42 176.8 644 31.8
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 5.3e-42 176.4 611 33.1
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 9.1e-42 175.6 643 31.6
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.2e-41 175.3 539 33.8
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.6e-41 174.9 539 33.8
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.6e-41 174.9 643 31.6
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.6e-41 174.1 648 31.3
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.5e-41 173.7 647 31.4
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 4.5e-41 173.3 644 32.1
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 7.7e-41 172.6 619 32.6
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.7e-40 171.4 647 31.2
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.9e-40 170.6 621 31.4
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 6.5e-40 169.5 605 32.1
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.1e-39 168.7 608 30.8
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 2.5e-39 167.5 572 32.7
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 5.5e-39 166.4 643 32.0
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 7.2e-39 166.0 611 31.1
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 1.2e-38 165.2 614 30.9
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 1.6e-38 164.9 617 31.0
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 2.7e-38 164.1 626 30.5
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 8.0e-38 162.5 605 31.2
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 8.0e-38 162.5 630 30.8
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 6.7e-37 159.5 627 30.8
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 6.7e-37 159.5 627 30.8
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 6.7e-37 159.5 627 30.8
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 8.8e-37 159.1 612 30.4
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 2.0e-36 157.9 622 31.4
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 3.3e-36 157.1 595 31.1
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 3.3e-36 157.1 593 31.0
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.7e-36 156.4 620 30.3
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.3e-35 155.2 307 40.1
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 2.2e-35 154.5 548 31.0
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 2.2e-35 154.5 583 30.0
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.8e-35 154.1 533 31.9
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 4.8e-35 153.3 578 32.2
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 4.8e-35 153.3 615 30.9
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 6.3e-35 152.9 605 30.9
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 6.3e-35 152.9 631 31.1
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.3e-35 152.9 532 32.3
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 2.4e-34 151.0 589 29.2
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 4.1e-34 150.2 606 30.7
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 4.1e-34 150.2 596 31.4
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 9.1e-34 149.1 596 29.5
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 2.0e-33 147.9 599 30.1
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 3.5e-33 147.1 592 30.4
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 5.9e-33 146.4 609 29.6
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 7.7e-33 146.0 613 27.6
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 7.7e-33 146.0 592 31.2
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 7.7e-33 146.0 547 31.4
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 1.0e-32 145.6 610 30.0
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 2.2e-32 144.4 603 29.4
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 2.9e-32 144.1 532 29.1
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 5.0e-32 143.3 574 31.2
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 1.1e-31 142.1 586 29.2
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.5e-31 141.7 595 29.4
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 2.5e-31 141.0 517 30.9
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 4.2e-31 140.2 591 31.0
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 4.2e-31 140.2 635 27.9
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 4.2e-31 140.2 557 29.1
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 1.2e-30 138.7 605 29.6
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 1.2e-30 138.7 627 30.6
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.6e-30 138.3 519 32.6
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 1.6e-30 138.3 555 29.5
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 6.1e-30 136.3 584 28.4
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 5.2e-29 133.3 577 29.8
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 2.0e-28 131.3 503 30.2
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.0e-28 131.3 613 27.6
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 2.6e-28 131.0 580 28.6
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 2.6e-28 131.0 609 28.2
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 3.4e-28 130.6 474 32.3
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 3.4e-28 130.6 531 28.8
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.3e-27 128.6 599 28.5
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 2.8e-27 127.5 266 38.0
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 1.1e-26 125.6 319 35.7
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 2.4e-26 124.4 596 27.2
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 2.4e-26 124.4 462 31.4
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 9.1e-26 122.5 317 35.6
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 9.1e-26 122.5 432 31.5
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.2e-25 122.1 541 28.8
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 2.0e-25 121.3 528 29.7
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 3.5e-25 120.6 622 26.7
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 7.7e-25 119.4 493 29.2
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 7.7e-25 119.4 547 28.7
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.0e-24 119.0 510 29.2
Thhalv10010857m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.9e-24 117.5 101 63.4
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 2.9e-24 117.5 617 26.6
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 5.0e-24 116.7 585 29.4
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 8.5e-24 115.9 458 30.1
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 1.1e-23 115.5 318 35.5
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.2e-23 114.0 449 29.4
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 3.2e-23 114.0 436 31.2
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.2e-23 114.0 449 29.4
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 3.2e-23 114.0 569 29.3
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 7.2e-23 112.8 304 34.5
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 7.2e-23 112.8 444 29.3
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 7.2e-23 112.8 304 34.5
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.2e-22 112.1 379 32.7
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-22 112.1 447 30.2
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 1.6e-22 111.7 447 29.5
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 3.6e-22 110.5 489 28.2
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 3.6e-22 110.5 519 29.9
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 6.1e-22 109.8 499 30.1
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 6.1e-22 109.8 591 28.3
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 1.0e-21 109.0 450 29.8
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.0e-21 109.0 456 30.0
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 1.8e-21 108.2 440 30.2
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 3.0e-21 107.5 411 33.8
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 4.0e-21 107.1 448 28.8
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 6.8e-21 106.3 548 26.8
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.7e-20 103.2 418 30.9
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.9e-19 100.1 473 29.0
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 4.9e-19 100.1 395 31.4
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 6.3e-19 99.8 486 28.6
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 7.0e-18 96.3 344 29.1
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 4.5e-17 93.6 478 26.4
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 5.9e-17 93.2 295 30.2
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 5.9e-17 93.2 761 24.7
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 7.8e-17 92.8 452 29.2
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 3.8e-16 90.5 276 35.1
C07p54920 Brassica napus HOM05D003079 ORTHO05D041168 1.1e-15 89.0 96 59.4
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 3.3e-15 87.4 295 31.9
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.1e-14 84.7 452 26.8
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 3.6e-14 84.0 587 26.6
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.8e-13 81.6 355 28.7
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 3.0e-13 80.9 516 27.7
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 3.0e-13 80.9 424 28.8
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 5.2e-13 80.1 509 28.7
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.6e-12 77.8 494 26.7
Ca_09552_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 2.9e-11 74.3 190 30.5
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 1.8e-10 71.6 573 26.5
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 5.4e-10 70.1 133 36.1
BolC7t45980H Brassica oleracea HOM05D003079 ORTHO05D041168 1.6e-09 68.6 51 66.7
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 2.0e-09 68.2 522 27.4
unitig_744.g24499 Utricularia gibba HOM05D003079 ORTHO05D003461 2.0e-09 68.2 513 26.5
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 3.5e-09 67.4 289 29.1
Ca_06048_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 3.5e-09 67.4 111 38.7
Lsat_1_v5_gn_9_88621 Lactuca sativa HOM05D003079 ORTHO05D003461 5.9e-09 66.6 491 25.1
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 1.3e-08 65.5 415 26.5
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 2.3e-08 64.7 357 24.1
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 1.9e-07 61.6 279 25.1
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 2.5e-07 61.2 510 24.9
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.3e-07 60.8 154 35.7
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 3.3e-07 60.8 126 34.9
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 1.6e-06 58.5 272 27.9
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 1.6e-06 58.5 518 26.3
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 3.6e-06 57.4 251 25.9


User provided reference genes

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