Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 8.8e-42 173.3 95 100.0
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.5e-38 162.5 89 100.0
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.5e-38 162.5 89 100.0
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 3.8e-37 157.9 100 91.0
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 7.2e-36 153.7 92 93.5
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 2.7e-35 151.8 98 86.7
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 6.7e-34 147.1 98 86.7
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.1e-33 146.4 98 86.7
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.5e-33 146.0 98 85.7
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 3.7e-32 141.4 98 82.7
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 7.0e-31 137.1 96 82.3
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 7.0e-31 137.1 90 87.8
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.3e-29 132.9 96 80.2
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.5e-28 129.4 93 82.8
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 4.2e-28 127.9 91 83.5
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 3.0e-26 121.7 96 72.9
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.3e-24 116.3 97 67.0
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.2e-24 115.5 97 70.1
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 3.1e-23 111.7 96 62.5
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 1.2e-22 109.8 80 83.8
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 2.7e-22 108.6 96 62.5
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 2.9e-21 105.1 97 61.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.5e-21 104.0 98 61.2
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.1e-20 103.2 95 58.9
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.9e-20 102.4 98 60.2
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.5e-20 102.1 94 56.4
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 9.4e-20 100.1 96 58.3
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.2e-19 99.8 96 58.3
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.2e-19 99.8 96 58.3
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.6e-19 99.4 98 57.1
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 3.6e-19 98.2 90 58.9
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.6e-19 98.2 95 60.0
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.6e-19 98.2 95 60.0
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 4.7e-19 97.8 95 56.8
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.7e-19 97.8 94 59.6
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 6.1e-19 97.4 96 57.3
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 8.0e-19 97.1 90 58.9
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.0e-18 96.7 92 59.8
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.0e-18 96.7 92 59.8
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.4e-18 96.3 92 57.6
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 4.0e-18 94.7 98 56.1
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 5.2e-18 94.4 96 55.2
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 5.2e-18 94.4 98 56.1
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 6.8e-18 94.0 97 56.7
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 6.8e-18 94.0 90 57.8
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 4.4e-17 91.3 93 53.8
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.7e-16 89.4 94 55.3
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.2e-16 89.0 94 52.1
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 2.2e-16 89.0 96 52.1
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 2.8e-16 88.6 97 51.5
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 6.3e-16 87.4 93 51.6
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 8.3e-16 87.0 97 52.6
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.1e-15 86.7 99 52.5
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 2.4e-15 85.5 92 54.3
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 3.1e-15 85.1 94 54.3
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 4.1e-15 84.7 99 53.5
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 4.1e-15 84.7 91 52.7
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 5.4e-15 84.3 98 52.0
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 5.4e-15 84.3 96 52.1
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 5.4e-15 84.3 94 50.0
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 7.0e-15 84.0 100 50.0
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.7e-14 82.0 93 51.6
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 96 50.0
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 96 50.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 96 50.0
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 94 51.1
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 3.5e-14 81.6 98 59.2
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 5.9e-14 80.9 84 54.8
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 5.9e-14 80.9 84 54.8
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 5.9e-14 80.9 92 51.1
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 7.7e-14 80.5 99 49.5
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 7.7e-14 80.5 92 47.8
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.3e-13 79.7 95 51.6
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.3e-13 79.7 92 52.2
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.3e-13 79.7 95 50.5
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.7e-13 79.3 80 51.2
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.7e-13 79.3 88 47.7
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.8e-13 78.2 92 48.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 6.5e-13 77.4 90 51.1
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 6.5e-13 77.4 96 47.9
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 8.6e-13 77.0 92 46.7
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 8.6e-13 77.0 93 51.6
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 8.6e-13 77.0 98 49.0
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.1e-12 76.6 92 48.9
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.9e-12 75.9 94 46.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 4.2e-12 74.7 94 50.0
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 4.2e-12 74.7 92 51.1
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 4.2e-12 74.7 82 51.2
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 5.5e-12 74.3 93 46.2
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 7.2e-12 73.9 89 51.7
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 3.6e-11 71.6 87 52.9
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 8.0e-11 70.5 105 50.5
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 8.0e-11 70.5 90 50.0
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 4.0e-10 68.2 96 49.0
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 6.8e-10 67.4 97 43.3
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 8.8e-10 67.0 94 47.9
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.5e-09 66.2 90 46.7
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.5e-09 66.2 89 48.3
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 2.0e-09 65.9 87 49.4
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 2.6e-09 65.5 93 50.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 3.4e-09 65.1 89 44.9
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.7e-08 62.8 95 43.2
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 2.2e-08 62.4 82 50.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 4.9e-08 61.2 48 62.5
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 6.3e-08 60.8 98 43.9
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.1e-07 60.1 76 50.0
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.4e-07 58.9 92 43.5
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 3.1e-07 58.5 68 50.0
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 4.1e-07 58.2 46 63.0
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 5.4e-07 57.8 88 46.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 5.4e-07 57.8 60 56.7
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 1.6e-06 56.2 86 46.5
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 2.0e-06 55.8 89 44.9
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 3.5e-06 55.1 60 53.3
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 5.9e-06 54.3 83 41.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 7.8e-06 53.9 67 43.3
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 7.8e-06 53.9 90 45.6
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 7.8e-06 53.9 57 47.4
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 7.8e-06 53.9 67 44.8


User provided reference genes

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